Blueberry Cheesecake

RSP 10680

Grower: Practical Possiblities

General Information

Sample Name
Blueberry Cheescake-1_21FEB2017
Accession Date
February 20, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
25.5%
CBD + CBDA
0.%
THCV + THCVA
0.%
CBC + CBCA
0.%
CBG + CBGA
0.3%
CBN + CBNA
0.%

Terpenoids

α-Bisabolol
0.%
Borneol
n/a
Camphene
0.%
Carene
0.%
Caryophyllene oxide
0.%
β-Caryophyllene
0.097%
Fenchol
n/a
Geraniol
0.%
α-Humulene
0.03%
Limonene
0.057%
Linalool
0.054%
Myrcene
0.457%
α-Phellandrene
n/a
Terpinolene
0.%
α-Terpineol
n/a
α-Terpinene
0.%
γ-Terpinene
0.%
Total Nerolidol
0.027%
Total Ocimene
0.048%
α-Pinene
0.23%
β-Pinene
0.066%

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.46%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0472
male female RSP10680

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.005 Grape Stomper (RSP11180)
  2. 0.215 Hermaphrodite ResearchSample2 (RSP11043)
  3. 0.216 Sunday Driver (RSP11071)
  4. 0.218 Hermaphrodite ResearchSample2 (RSP11050)
  5. 0.224 Lemon G13 (RSP11465)
  6. 0.228 RKM-2018-026 (RSP11118)
  7. 0.233 Rest (RSP11377)
  8. 0.235 RKM-2018-017 (RSP11109)
  9. 0.235 RKM-2018-021 (RSP11113)
  10. 0.236 RKM-2018-032 (RSP11124)
  11. 0.238 Headcheese (RSP11192)
  12. 0.238 Domnesia (RSP11184)
  13. 0.239 LEMONCAKE (RSP11340)
  14. 0.239 GG#4 (RSP11461)
  15. 0.240 Peanut Butter Breath (RSP11640)
  16. 0.241 Mother s Milk No 31 (RSP11623)
  17. 0.242 GG4 (RSP12096)
  18. 0.242 SPQ -quite resistant- (RSP11370)
  19. 0.245 Power Plant (RSP11223)
  20. 0.245 Gorilla Cookies (RSP11231)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.222 RKM-2018-026 (RSP11118)
  2. 0.222 Hermaphrodite ResearchSample2 (RSP11050)
  3. 0.226 RKM-2018-032 (RSP11124)
  4. 0.247 RKM-2018-009 (RSP11100)
  5. 0.256 Liberty Haze (RSP11000)
  6. 0.257 Blueberry Cheesecake (RSP10684)
  7. 0.262 RKM-2018-033 (RSP11125)
  8. 0.264 Pie Hoe (RSP11073)
  9. 0.266 Kimbo Slice (RSP10997)
  10. 0.267 Skunk#18 (RSP11038)
  11. 0.270 The Gift (RSP10988)
  12. 0.270 Golden Goat 2 (RSP10991)
  13. 0.273 RKM-2018-004 (RSP11096)
  14. 0.274 Durban Poison (RSP11014)
  15. 0.277 Blue Dream (RSP11033)
  16. 0.280 Gold Cracker (RSP11048)
  17. 0.281 RKM-2018-029 (RSP11121)
  18. 0.284 Cbot-2019-004 (RSP11132)
  19. 0.285 RKM-2018-020 (RSP11112)
  20. 0.291 Queen Jesus (RSP10105)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.438 Cherry Blossom (RSP11311)
  2. 0.431 Cherry Blossom (RSP11323)
  3. 0.426 Cherry Blossom (RSP11333)
  4. 0.415 Cherry Blossom (RSP11314)
  5. 0.415 Cherry Blossom (RSP11318)
  6. 0.413 CS Indica (RSP11658)
  7. 0.411 Cherry Blossom (RSP11308)
  8. 0.410 Cherry Blossom (RSP11317)
  9. 0.410 Cherry Blossom (RSP11335)
  10. 0.407 Cherry Blossom (RSP11328)
  11. 0.406 Cherry Blossom (RSP11274)
  12. 0.404 Tanao Sri -46- (RSP11486)
  13. 0.402 Tiger Tail -30- (RSP11484)
  14. 0.400 Cherry Blossom (RSP11312)
  15. 0.399 Cherry Blossom (RSP11298)
  16. 0.399 JL Cross 29 (RSP11530)
  17. 0.398 Cherry (RSP11142)
  18. 0.397 Unknown--Cherry Wine---003- (RSP11270)
  19. 0.397 BagSeed (RSP12627)
  20. 0.397 Cherry Blossom (RSP11334)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.400 Cherry (RSP11142)
  2. 0.374 RKM-2018-022 (RSP11114)
  3. 0.370 Cbot-2019-005 (RSP11133)
  4. 0.357 Carmagnola (RSP11037)
  5. 0.356 Cbot-2019-001 (RSP11129)
  6. 0.353 JL yellow (RSP11075)
  7. 0.353 USO 31 (RSP10981)
  8. 0.349 Monoica (RSP10241)
  9. 0.344 Cherry (RSP11143)
  10. 0.342 Futura 75 (RSP10664)
  11. 0.342 Kush Hemp E1 (RSP11128)
  12. 0.341 Fedora 17 (RSP10661)
  13. 0.341 Jiangji (RSP10653)
  14. 0.340 Santhica27 (RSP11047)
  15. 0.340 Carmagnola (RSP10979)
  16. 0.340 Lovrin (RSP10658)
  17. 0.339 RKM-2018-028 (RSP11120)
  18. 0.338 Blueberry Cheesecake (RSP10672)
  19. 0.337 Black Beauty (RSP11035)
  20. 0.336 RKM-2018-018 (RSP11110)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4451125
Overlapping SNPs:
89
Concordance:
60

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
d335ffcc4acc7a99c6683c275006341f5960a3b6f29ebec7d45fd8107b117563
Stamping Certificate
Download PDF (852.7 KB)
SHASUM Hash
3779c5acb2efe6b6e600f251d02e81ebf4f3041a08ef35c40e061a9e2648e86c
QR code for RSP10680

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