Skywalker OG

RSP 10837

Grower: THC Design

General Information

Sample Name
9_Skywalker OG
Accession Date
March 28, 2017
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
25.06%
CBD + CBDA
0.0633%
THCV + THCVA
n/a
CBC + CBCA
n/a
CBG + CBGA
n/a
CBN + CBNA
n/a

Terpenoids

α-Bisabolol
0.0724%
Borneol
0.0075%
Camphene
0.0191%
Carene
n/a
Caryophyllene oxide
0.0001%
β-Caryophyllene
0.6873%
Fenchol
0.0437%
Geraniol
0.0095%
α-Humulene
0.2027%
Limonene
0.6416%
Linalool
0.15%
Myrcene
1.4092%
α-Phellandrene
n/a
Terpinolene
0.0193%
α-Terpineol
0.0437%
α-Terpinene
n/a
γ-Terpinene
n/a
Total Nerolidol
0.0279%
Total Ocimene
n/a
α-Pinene
0.0613%
β-Pinene
0.1224%

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.73%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0567
male female RSP10837

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.002 SFVxTK (RSP11072)
  2. 0.008 Red Eye OG (RSP11190)
  3. 0.013 Absolute OG (RSP11455)
  4. 0.021 East side OG (RSP12089)
  5. 0.071 RKM-2018-013 (RSP11104)
  6. 0.088 Rugburn OG (RSP11353)
  7. 0.122 501st OG (RSP11241)
  8. 0.139 RKM-2018-012 (RSP11103)
  9. 0.140 RKM-2018-034 (RSP11126)
  10. 0.150 RKM-2018-026 (RSP11118)
  11. 0.152 Pie Hoe (RSP11073)
  12. 0.155 SourD (RSP12092)
  13. 0.162 Deadhead OG (RSP11463)
  14. 0.163 Pure Power Plant (RSP11265)
  15. 0.166 Casco Kush (RSP11167)
  16. 0.174 Motor Breath #15 (RSP12093)
  17. 0.178 Garlic (RSP11341)
  18. 0.182 Fatso (RSP11741)
  19. 0.182 Black Triangle (RSP11638)
  20. 0.183 Bueller F3 (RSP12503)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.137 RKM-2018-034 (RSP11126)
  2. 0.156 RKM-2018-026 (RSP11118)
  3. 0.167 Pie Hoe (RSP11073)
  4. 0.189 The Gift (RSP10988)
  5. 0.232 RKM-2018-002 (RSP11093)
  6. 0.234 RKM-2018-032 (RSP11124)
  7. 0.248 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.259 RKM-2018-020 (RSP11112)
  9. 0.265 RKM-2018-004 (RSP11096)
  10. 0.268 RKM-2018-033 (RSP11125)
  11. 0.270 Kimbo Slice (RSP10997)
  12. 0.292 Blueberry Cheesecake (RSP10680)
  13. 0.296 Kush Hemp E1 (RSP11128)
  14. 0.301 Blueberry Cheesecake (RSP10684)
  15. 0.303 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.308 Liberty Haze (RSP11000)
  17. 0.314 Ivory (RSP10668)
  18. 0.315 Tygra (RSP10667)
  19. 0.315 Gold Cracker (RSP11048)
  20. 0.317 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.493 Cherry Blossom (RSP11318)
  2. 0.476 Northern Skunk (RSP11456)
  3. 0.473 Tanao Sri -46- (RSP11486)
  4. 0.471 Cherry Blossom (RSP11323)
  5. 0.470 Wife (RSP11148)
  6. 0.469 Unknown--Cherry Wine---001- (RSP11268)
  7. 0.452 Unknown--Cherry Wine---002- (RSP11269)
  8. 0.450 Cherry Blossom (RSP11301)
  9. 0.449 Brunswick High (RSP11164)
  10. 0.449 Cherry Blossom (RSP11312)
  11. 0.447 Unknown--Cherry Wine---003- (RSP11270)
  12. 0.446 Cherry Blossom (RSP11315)
  13. 0.443 JL yellow (RSP11075)
  14. 0.443 JL 3rd Gen Mother (RSP11214)
  15. 0.440 Cherry Blossom (RSP11300)
  16. 0.438 Cherry Blossom (RSP11306)
  17. 0.438 JL Cross 25 (RSP11526)
  18. 0.437 Cherry Blossom (RSP11325)
  19. 0.437 Cherry Blossom (RSP11319)
  20. 0.436 Avidekel 05MAY2017 (RSP10938)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.439 JL yellow (RSP11075)
  2. 0.418 Cbot-2019-005 (RSP11133)
  3. 0.409 Cherry (RSP11142)
  4. 0.407 RKM-2018-023 (RSP11115)
  5. 0.405 Cherry (RSP11143)
  6. 0.401 Black Beauty (RSP11035)
  7. 0.398 Cbot-2019-004 (RSP11132)
  8. 0.396 RKM-2018-006 (RSP11097)
  9. 0.393 RKM-2018-027 (RSP11119)
  10. 0.391 RKM-2018-028 (RSP11120)
  11. 0.387 Cbot-2019-001 (RSP11129)
  12. 0.382 Italian Kiss (RSP11034)
  13. 0.380 RKM-2018-003 (RSP11094)
  14. 0.379 RKM-2018-018 (RSP11110)
  15. 0.376 RKM-2018-022 (RSP11114)
  16. 0.374 Carmagnola (RSP11037)
  17. 0.373 UP Sunrise (RSP10989)
  18. 0.369 Feral (RSP10890)
  19. 0.366 RKM-2018-031 (RSP11123)
  20. 0.365 Monoica (RSP10241)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347029
Overlapping SNPs:
119
Concordance:
119

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495293
Overlapping SNPs:
15
Concordance:
15

Blockchain Registration Information

Transaction ID
c038083bb3e4fcf0a4c8bc17582e2d75ae7f8ba9c86066ca4abeadda351906e4
Stamping Certificate
Download PDF (867.8 KB)
SHASUM Hash
8859d8574e5465980729510028d6a32a9c845747f583e6f060aedb97dcfed326
QR code for RSP10837

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