Eran Almog_05MAY2017

RSP 10937

Grower: DigiPath Labs

General Information

Accession Date
May 4, 2017
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.12%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0395
male female RSP10937

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.204 Square Wave (RSP11344)
  2. 0.215 Wedding Pie (RSP11745)
  3. 0.218 Strawberry Cough (RSP11356)
  4. 0.219 Alaska USA (RSP11171)
  5. 0.221 Pie Hoe (RSP11073)
  6. 0.222 Erez 05MAY2017 (RSP10942)
  7. 0.223 Serious Happiness (RSP10763)
  8. 0.228 Whitey (RSP11363)
  9. 0.230 RKM-2018-020 (RSP11112)
  10. 0.232 Strawberry (RSP12095)
  11. 0.232 SourD (RSP12092)
  12. 0.233 RKM-2018-022 (RSP11114)
  13. 0.235 Green Crack (RSP12099)
  14. 0.240 Electra (RSP11366)
  15. 0.242 Doug s Varin (RSP11243)
  16. 0.242 Miss X (RSP10999)
  17. 0.244 Domnesia (RSP11184)
  18. 0.244 Flo (RSP11232)
  19. 0.245 Durban Poison #1 (RSP11013)
  20. 0.249 White Label 2 (RSP11337)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.215 Pie Hoe (RSP11073)
  2. 0.226 RKM-2018-020 (RSP11112)
  3. 0.234 RKM-2018-022 (RSP11114)
  4. 0.244 RKM-2018-034 (RSP11126)
  5. 0.259 Recon (RSP10755)
  6. 0.265 RKM-2018-019 (RSP11111)
  7. 0.265 Blueberry Cheesecake (RSP10684)
  8. 0.269 The Gift (RSP10988)
  9. 0.270 Liberty Haze (RSP11000)
  10. 0.272 Gold Cracker (RSP11048)
  11. 0.275 Skywalker OG (RSP10837)
  12. 0.275 Golden Goat 2 (RSP10991)
  13. 0.276 UP Sunrise (RSP10989)
  14. 0.283 Durban Poison (RSP11014)
  15. 0.290 RKM-2018-023 (RSP11115)
  16. 0.291 Queen Jesus (RSP10105)
  17. 0.292 Kimbo Slice (RSP10997)
  18. 0.294 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.296 RKM-2018-026 (RSP11118)
  20. 0.300 Cbot-2019-006 (RSP11134)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.483 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  2. 0.481 Cherry Blossom (RSP11323)
  3. 0.474 Cherry Blossom (RSP11328)
  4. 0.457 Cherry Blossom (RSP11318)
  5. 0.457 Tanao Sri -46- (RSP11486)
  6. 0.447 Cherry Blossom (RSP11298)
  7. 0.444 Cherry Blossom (RSP11306)
  8. 0.442 Cherry Blossom (RSP11330)
  9. 0.442 Unknown--Cherry Wine---001- (RSP11268)
  10. 0.437 Cherry Blossom (RSP11309)
  11. 0.432 Cherry Blossom (RSP11325)
  12. 0.430 Wife (RSP11148)
  13. 0.428 Unknown--Cherry Wine---003- (RSP11270)
  14. 0.427 Cherry Blossom (RSP11301)
  15. 0.426 Cherry Blossom (RSP11312)
  16. 0.419 RKM-2018-024 (RSP11116)
  17. 0.414 Chem 91 (RSP11185)
  18. 0.414 80E (RSP11213)
  19. 0.412 Feral (RSP10890)
  20. 0.411 Feral (RSP11206)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.398 Feral (RSP10890)
  2. 0.390 Cherry (RSP11143)
  3. 0.388 Monoica (RSP10241)
  4. 0.383 Cbot-2019-001 (RSP11129)
  5. 0.383 Carmagnola (RSP11037)
  6. 0.380 JL yellow (RSP11075)
  7. 0.372 Cbot-2019-005 (RSP11133)
  8. 0.369 Cbot-2019-004 (RSP11132)
  9. 0.369 Carmagnola (RSP10979)
  10. 0.368 Blueberry Cheesecake (RSP10680)
  11. 0.366 Blueberry Cheesecake (RSP10672)
  12. 0.362 Sour Raspberry (RSP10551)
  13. 0.362 Futura 75 (RSP10664)
  14. 0.360 Santhica27 (RSP11047)
  15. 0.358 RKM-2018-009 (RSP11100)
  16. 0.357 RKM-2018-006 (RSP11097)
  17. 0.356 USO 31 (RSP10981)
  18. 0.352 Tisza (RSP11044)
  19. 0.350 Ivory (RSP10668)
  20. 0.349 RKM-2018-031 (RSP11123)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346391
Overlapping SNPs:
72
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495248
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
b6a67da5891a6318eb139d1c3ff4193506669fe1d8047726465f75cb1cd630ed
Stamping Certificate
Download PDF (864.0 KB)
SHASUM Hash
30aca398831fca069d962b52ddeeeca7d2eeb9853245ea83eed399640e25ea14
QR code for RSP10937

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