Avidekel_05MAY2017
RSP 10938
Grower: DigiPath Labs
General Information
- Accession Date
- May 4, 2017
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.492G>C | p.Glu164Asp | missense variant | moderate | contig700 | 2721181 | C/G |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
DXR-1 | c.20G>T | p.Cys7Phe | missense variant | moderate | contig380 | 235947 | C/A |
|
DXR-2 | c.1140A>C | p.Lys380Asn | missense variant | moderate | contig380 | 285582 | T/G |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.187 Midnight (RSP10941)
- 0.200 AVIDEKEL USA (RSP11169)
- 0.205 RAPHAEL 2 (RSP11172)
- 0.220 Queen Dream CBG (RSP11283)
- 0.220 FL30 (RSP11361)
- 0.222 Cbot-2019-003 (RSP11131)
- 0.222 RAPHAEL 4 (RSP11173)
- 0.223 Wife (RSP11148)
- 0.231 Hot Blonde (RSP11292)
- 0.234 Cherry Blossom (RSP11312)
- 0.235 Durban Poison 1 (RSP11013)
- 0.238 Hot Blonde (RSP11290)
- 0.240 Queen Dream CBG (RSP11295)
- 0.242 CANNATONIC (RSP11349)
- 0.243 Cherry Wine (RSP11305)
- 0.244 Cherry Wine (RSP11307)
- 0.245 Cherry Wine (RSP11145)
- 0.249 Durban Poison 1 (RSP10996)
- 0.253 Queen Dream CBG (RSP11294)
- 0.258 RINGO S ANGEL (RSP10085)
Nearest genetic relatives (Base Tree)
- 0.268 Blueberry Cheesecake (RSP10684)
- 0.274 Durban Poison (RSP11014)
- 0.276 Cherry (RSP11143)
- 0.280 Cbot-2019-001 (RSP11129)
- 0.303 Liberty Haze (RSP11000)
- 0.306 Cbot-2019-004 (RSP11132)
- 0.320 Cbot-2019-005 (RSP11133)
- 0.321 Blueberry Cheesecake (RSP10672)
- 0.328 RKM-2018-003 (RSP11094)
- 0.328 Golden Goat 2 (RSP10991)
- 0.333 QUEEN JESUS (RSP10105)
- 0.342 UP Sunrise (RSP10989)
- 0.348 CST (RSP11002)
- 0.363 Tygra (RSP10667)
- 0.363 Skunk 18 (RSP11038)
- 0.366 RKM-2018-027 (RSP11119)
- 0.366 Recon (RSP10755)
- 0.367 RKM-2018-020 (RSP11112)
- 0.367 RKM-2018-018 (RSP11110)
- 0.368 Cherry (RSP11142)
Most genetically distant strains (All Samples)
- 0.505 80E (RSP11213)
- 0.496 80E (RSP11211)
- 0.483 80E (RSP11212)
- 0.479 Chem 91 (RSP11185)
- 0.473 RKM-2018-026 (RSP11118)
- 0.473 JL yellow (RSP11075)
- 0.466 Abacus (RSP11266)
- 0.463 Star Dawg (RSP11352)
- 0.456 JL 3rd Gen Mother (RSP11214)
- 0.445 Red Eye OG (RSP11190)
- 0.445 Rugburn OG (RSP11353)
- 0.442 RKM-2018-012 (RSP11103)
- 0.442 JL 4th Gen 2 (RSP11194)
- 0.442 Skywalker OG (RSP10837)
- 0.439 Cherry Blossom (RSP11333)
- 0.438 RKM-2018-009 (RSP11100)
- 0.438 White Label 1 (RSP11336)
- 0.437 SFVxTK (RSP11072)
- 0.437 Garlic (RSP11341)
- 0.435 Dominion Skunk (RSP11354)
Most genetically distant strains (Base Tree)
- 0.474 RKM-2018-026 (RSP11118)
- 0.465 JL yellow (RSP11075)
- 0.452 Skywalker OG (RSP10837)
- 0.447 RKM-2018-009 (RSP11100)
- 0.432 Carmagnola (RSP11037)
- 0.430 Monoica (RSP10241)
- 0.422 Feral (RSP10890)
- 0.420 RKM-2018-019 (RSP11111)
- 0.418 Ivory (RSP10668)
- 0.417 Santhica27 (RSP11047)
- 0.416 Kush Hemp E1 (RSP11128)
- 0.415 RKM-2018-034 (RSP11126)
- 0.414 RKM-2018-032 (RSP11124)
- 0.413 Cbot-2019-006 (RSP11134)
- 0.413 RKM-2018-002 (RSP11093)
- 0.412 RKM-2018-005 (RSP11096)
- 0.411 Sour Raspberry (RSP10551)
- 0.409 RKM-2018-022 (RSP11114)
- 0.409 USO 31 (RSP10981)
- 0.406 Kyrgyz Gold (RSP11054)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 72
- Concordance:
- 69
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
13f5dcbf5a920635
bbeb047a5fac34ec c27991decf43a99b 4ca6c58046e4897f - Stamping Certificate
- Download PDF (856.9 KB)
- SHASUM Hash
-
fe6347b393b3fb64
24716523b1c700ea ac5e1d0a7724ace9 3897753e5417b388