Erez_05MAY2017
RSP 10942
Grower: DigiPath Labs
General Information
- Accession Date
- May 4, 2017
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
aPT4 | c.16G>A | p.Val6Ile | missense variant | moderate | contig121 | 2828672 | G/A |
|
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.000 Alaska USA (RSP11171)
- 0.152 Serious Happiness (RSP10763)
- 0.161 Domnesia (RSP11184)
- 0.162 Liberty Haze (RSP11000)
- 0.165 Durban Poison 1 (RSP10996)
- 0.167 Durban Poison 1 (RSP11013)
- 0.171 Liberty Haze (RSP10946)
- 0.177 Gold Cracker (RSP11048)
- 0.178 Blueberry Cheesecake (RSP10684)
- 0.181 Durban Poison (RSP11014)
- 0.185 Doug s Varin (RSP11243)
- 0.185 Big Bud (RSP11221)
- 0.188 Black Jack (RSP10603)
- 0.189 Saint Jack (RSP11179)
- 0.191 Blue Dream (RSP11017)
- 0.192 Gold Cracker (RSP11041)
- 0.196 Jacks Cleaner (RSP11347)
- 0.201 RKM-2018-025 (RSP11117)
- 0.202 RKM-2018-001 (RSP11092)
- 0.203 RKM-2018-016 (RSP11108)
Nearest genetic relatives (Base Tree)
- 0.166 Liberty Haze (RSP11000)
- 0.186 Durban Poison (RSP11014)
- 0.187 Blueberry Cheesecake (RSP10684)
- 0.193 Gold Cracker (RSP11048)
- 0.204 Golden Goat 2 (RSP10991)
- 0.204 RKM-2018-031 (RSP11123)
- 0.205 RKM-2018-023 (RSP11115)
- 0.217 RKM-2018-022 (RSP11114)
- 0.229 Italian Kiss (RSP11034)
- 0.236 UP Sunrise (RSP10989)
- 0.237 RKM-2018-027 (RSP11119)
- 0.239 RKM-2018-019 (RSP11111)
- 0.244 QUEEN JESUS (RSP10105)
- 0.244 Cbot-2019-006 (RSP11134)
- 0.250 RKM-2018-018 (RSP11110)
- 0.254 Hermaphrodite Research Sample1 (RSP11049)
- 0.258 Recon (RSP10755)
- 0.259 Pie Hoe (RSP11073)
- 0.262 CST (RSP11002)
- 0.262 RKM-2018-020 (RSP11112)
Most genetically distant strains (All Samples)
- 0.462 Cherry Blossom (RSP11323)
- 0.455 Unknown- Cherry Wine - 001 (RSP11268)
- 0.447 Cbot-2019-005 (RSP11133)
- 0.443 Cherry Blossom (RSP11328)
- 0.432 Cherry Blossom (RSP11311)
- 0.431 Cherry Blossom (RSP11301)
- 0.422 Cherry Blossom (RSP11334)
- 0.417 80E (RSP11213)
- 0.416 Cherry Blossom (RSP11325)
- 0.412 Cherry Blossom (RSP11314)
- 0.411 Cherry Blossom (RSP11309)
- 0.411 Unknown- Cherry Wine - 003 (RSP11270)
- 0.410 Unknown- Cherry Wine - 002 (RSP11269)
- 0.407 Unknown- Cherry Wine - 004 (RSP11271)
- 0.403 Feral (RSP11205)
- 0.397 Cherry Blossom (RSP11306)
- 0.395 80E (RSP11212)
- 0.395 Cherry Blossom (RSP11318)
- 0.392 Cherry Blossom CBG (RSP11303)
- 0.389 80E (RSP11211)
Most genetically distant strains (Base Tree)
- 0.465 Cbot-2019-005 (RSP11133)
- 0.379 Kush Hemp E1 (RSP11128)
- 0.372 Ivory (RSP10668)
- 0.367 Feral (RSP10890)
- 0.360 Santhica27 (RSP11047)
- 0.358 Monoica (RSP10241)
- 0.357 Carmagnola (RSP11037)
- 0.354 RKM-2018-026 (RSP11118)
- 0.350 Carmagnola (RSP10979)
- 0.350 USO 31 (RSP10981)
- 0.349 Cbot-2019-004 (RSP11132)
- 0.348 Tisza (RSP11044)
- 0.348 Lovrin (RSP10658)
- 0.340 JL yellow (RSP11075)
- 0.339 Futura 75 (RSP10664)
- 0.338 Jiangji (RSP10653)
- 0.336 KYRG-11 (RSP11051)
- 0.332 Kyrgyz Gold (RSP11054)
- 0.331 Cherry (RSP11143)
- 0.327 Tisza (RSP10659)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 71
- Concordance:
- 68
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 5
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
4e1c5357acbcf292
819ee5350da323c3 82c0bb5e54cfbc97 b8e5cc1224b48812 - Stamping Certificate
- Download PDF (854.7 KB)
- SHASUM Hash
-
d0f60e588188b4b7
7472826d61b55cc7 9256c3147108a7ab 5c6ca1938a72ea8f