Carmagnola
RSP 10979
General Information
- Sample Name
- Carm_3_3_CSU
- Accession Date
- July 16, 2017
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
aPT4 | c.757G>T | p.Val253Leu | missense variant | moderate | contig121 | 2831364 | G/T |
|
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
Nearest genetic relatives (All Samples)
- 0.002 Carmagnola (RSP10976)
- 0.004 Carmagnola (RSP10978)
- 0.007 Carmagnola (RSP11202)
- 0.134 Carmagnola (RSP10655)
- 0.148 Carmagnola (RSP10982)
- 0.151 Carmagnola (RSP10977)
- 0.152 Carmagnola USO 31 (RSP11204)
- 0.153 Carmagnola (RSP11039)
- 0.156 Carmagnola (RSP11037)
- 0.160 Carmagnola (RSP10980)
- 0.203 Tisza (RSP11044)
- 0.206 Tisza (RSP11045)
- 0.211 CS (RSP11208)
- 0.214 Santhica 27 (RSP10665)
- 0.220 Tisza (RSP10659)
- 0.223 Santhica27 (RSP10056)
- 0.224 Santhica27 (RSP11046)
- 0.226 Ivory (RSP10668)
- 0.229 Diana (RSP10235)
- 0.232 Tygra (RSP10667)
Nearest genetic relatives (Base Tree)
- 0.163 Carmagnola (RSP11037)
- 0.205 Tisza (RSP11044)
- 0.221 Tisza (RSP10659)
- 0.224 Ivory (RSP10668)
- 0.226 Futura 75 (RSP10664)
- 0.233 Santhica27 (RSP11047)
- 0.233 Fedora 17 (RSP10661)
- 0.236 Monoica (RSP10241)
- 0.237 Tygra (RSP10667)
- 0.239 Lovrin (RSP10658)
- 0.243 Feral (RSP10890)
- 0.249 Kyrgyz Gold (RSP11054)
- 0.253 USO 31 (RSP10981)
- 0.257 KYRG-11 (RSP11051)
- 0.277 Jiangji (RSP10653)
- 0.297 Recon (RSP10755)
- 0.299 Kimbo Slice (RSP10997)
- 0.313 Durban Poison (RSP11014)
- 0.315 CST (RSP11002)
- 0.316 Blueberry Cheesecake (RSP10684)
Most genetically distant strains (All Samples)
- 0.449 Cherry Blossom (RSP11323)
- 0.444 Cherry Blossom (RSP11312)
- 0.442 Cherry Blossom (RSP11318)
- 0.442 Cherry Blossom (RSP11311)
- 0.438 Unknown- Cherry Wine - 001 (RSP11268)
- 0.434 Cherry Blossom (RSP11308)
- 0.432 Cherry Blossom (RSP11335)
- 0.425 Cherry Blossom (RSP11334)
- 0.425 Cherry Blossom (RSP11298)
- 0.424 Cherry Blossom (RSP11300)
- 0.412 Cherry Blossom (RSP11319)
- 0.412 Unknown- Cherry Wine - 002 (RSP11269)
- 0.412 Cherry Blossom (RSP11301)
- 0.408 Cherry Blossom (RSP11316)
- 0.406 Cherry Blossom (RSP11321)
- 0.405 Cherry Blossom (RSP11331)
- 0.401 Cherry Blossom (RSP11328)
- 0.401 Unknown- Cherry Wine - 003 (RSP11270)
- 0.400 Cherry Blossom (RSP11325)
- 0.400 Avidekel (RSP10938)
Most genetically distant strains (Base Tree)
- 0.394 Cbot-2019-005 (RSP11133)
- 0.376 RKM-2018-002 (RSP11093)
- 0.373 Kush Hemp E1 (RSP11128)
- 0.370 RKM-2018-022 (RSP11114)
- 0.370 Blueberry Cheesecake (RSP10672)
- 0.368 Cherry (RSP11143)
- 0.366 Cbot-2019-001 (RSP11129)
- 0.364 Cherry (RSP11142)
- 0.358 RKM-2018-023 (RSP11115)
- 0.358 RKM-2018-018 (RSP11110)
- 0.350 Skunk 18 (RSP11038)
- 0.348 RKM-2018-028 (RSP11120)
- 0.347 UP Sunrise (RSP10989)
- 0.347 Cbot-2019-004 (RSP11132)
- 0.347 RKM-2018-019 (RSP11111)
- 0.346 JL yellow (RSP11075)
- 0.344 RKM-2018-032 (RSP11124)
- 0.343 The Gift (RSP10988)
- 0.342 RKM-2018-005 (RSP11096)
- 0.341 RKM-2018-006 (RSP11097)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 47
- Concordance:
- 31
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- Transaction ID
-
dda79addd2ae73a9
2d8a12b5ded47106 41f86c50007f1112 c5bb62e7ef192f9c - Stamping Certificate
- Download PDF (842.1 KB)
- SHASUM Hash
-
ebd8f5785997922c
6477d069f67013b0 198880a9f03c1000 d7a300f97bfba30d