USO 31
RSP 10983
General Information
- Sample Name
- USO31_1_1_CSU
- Accession Date
- July 16, 2017
- Reported Plant Sex
- Hermaphrodite
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
aPT1 |
c.95_97delGT |
p.Cys32del | disruptive inframe deletion | moderate | contig121 | 2835800 | ATGT/A | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 | c.679G>C | p.Gly227Arg | missense variant | moderate | contig95 | 1990632 | G/C |
|
Nearest genetic relatives (All Samples)
- 0.006 USO 31 (RSP10981)
- 0.136 Lovrin (RSP10658)
- 0.139 Carmagnola USO 31 (RSP11204)
- 0.150 USO31 (RSP10233)
- 0.172 Fedora 17 (RSP10661)
- 0.179 Santhica27 (RSP11046)
- 0.180 Santhica27 (RSP10056)
- 0.181 Santhica27 (RSP11047)
- 0.183 Fedora 17 (RSP11203)
- 0.185 Diana (RSP10235)
- 0.186 Tygra (RSP10667)
- 0.189 Ivory (RSP10668)
- 0.190 Monoica (RSP10241)
- 0.192 Futura 75 (RSP10664)
- 0.192 Santhica 27 (RSP10665)
- 0.213 KYRG-151 (RSP11052)
- 0.213 Tisza (RSP10659)
- 0.215 Carmagnola (RSP10982)
- 0.221 Carmagnola (RSP11037)
- 0.221 Carmagnola (RSP10977)
Nearest genetic relatives (Base Tree)
- 0.006 USO 31 (RSP10981)
- 0.140 Lovrin (RSP10658)
- 0.173 Fedora 17 (RSP10661)
- 0.177 Santhica27 (RSP11047)
- 0.183 Ivory (RSP10668)
- 0.187 Monoica (RSP10241)
- 0.188 Futura 75 (RSP10664)
- 0.191 Tygra (RSP10667)
- 0.210 Tisza (RSP10659)
- 0.226 Carmagnola (RSP11037)
- 0.227 Tisza (RSP11044)
- 0.236 KYRG-11 (RSP11051)
- 0.242 Carmagnola (RSP10979)
- 0.244 Kyrgyz Gold (RSP11054)
- 0.249 Feral (RSP10890)
- 0.263 Jiangji (RSP10653)
- 0.287 RKM-2018-029 (RSP11121)
- 0.303 Recon (RSP10755)
- 0.304 Kimbo Slice (RSP10997)
- 0.312 Liberty Haze (RSP11000)
Most genetically distant strains (All Samples)
- 0.475 Cherry Blossom (RSP11318)
- 0.461 Cherry Blossom (RSP11312)
- 0.455 Cherry Blossom (RSP11323)
- 0.446 Cherry Blossom (RSP11311)
- 0.445 Cherry Blossom (RSP11331)
- 0.443 Cherry Blossom (RSP11328)
- 0.441 Cherry Blossom (RSP11300)
- 0.439 Unknown- Cherry Wine - 001 (RSP11268)
- 0.438 Cherry Blossom (RSP11299)
- 0.438 Cherry Blossom (RSP11310)
- 0.437 Cherry Blossom (RSP11298)
- 0.430 Cherry Blossom (RSP11334)
- 0.430 Cherry Blossom (RSP11332)
- 0.430 Cherry Blossom (RSP11319)
- 0.427 Cherry Blossom (RSP11302)
- 0.427 Cherry Blossom (RSP11274)
- 0.425 Cherry Blossom (RSP11304)
- 0.424 Cherry Blossom (RSP11316)
- 0.424 Wife (RSP11148)
- 0.423 Cherry Blossom (RSP11308)
Most genetically distant strains (Base Tree)
- 0.395 RKM-2018-002 (RSP11093)
- 0.386 Cbot-2019-005 (RSP11133)
- 0.375 Cherry (RSP11143)
- 0.372 RKM-2018-028 (RSP11120)
- 0.370 RKM-2018-006 (RSP11097)
- 0.365 JL yellow (RSP11075)
- 0.362 RKM-2018-023 (RSP11115)
- 0.362 Skunk 18 (RSP11038)
- 0.359 Cbot-2019-001 (RSP11129)
- 0.357 RKM-2018-032 (RSP11124)
- 0.356 RKM-2018-018 (RSP11110)
- 0.355 Cbot-2019-004 (RSP11132)
- 0.353 RKM-2018-022 (RSP11114)
- 0.353 Cherry (RSP11142)
- 0.351 RKM-2018-003 (RSP11094)
- 0.350 Hermaphrodite Research Sample1 (RSP11049)
- 0.349 Golden Goat 2 (RSP10991)
- 0.348 Blueberry Cheesecake (RSP10672)
- 0.348 UP Sunrise (RSP10989)
- 0.347 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 117
- Concordance:
- 87
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 7
- Concordance:
- 6
Blockchain Registration Information
- Transaction ID
-
aa2241bed437c94c
bf06b5a718c45487 bc25c2124a323580 0e3a9ffa9b8db3c5 - Stamping Certificate
- Download PDF (856.9 KB)
- SHASUM Hash
-
7772136e8bbb0503
3c7e1f4185e47660 19378ad19913f564 cb463d5655733e9a