The Gift

RSP 10988

Grower: Manoa Botanicals

General Information

Sample Name
The Gift_17JUL2017
Accession Date
July 16, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.76%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0620
male female RSP10988

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.008 RKM-2018-008 (RSP11099)
  2. 0.140 ILM (RSP12623)
  3. 0.161 Pure Power Plant (RSP11265)
  4. 0.164 RKM-2018-021 (RSP11113)
  5. 0.164 RKM-2018-017 (RSP11109)
  6. 0.165 RKM-2018-032 (RSP11124)
  7. 0.168 Gorilla Cookies (RSP11231)
  8. 0.176 Mendo Purple (RSP11494)
  9. 0.177 GG4 (RSP12096)
  10. 0.180 Black Triangle (RSP11638)
  11. 0.185 LEMONCAKE (RSP11340)
  12. 0.186 Absolute OG (RSP11455)
  13. 0.186 Kimbo Slice (RSP10997)
  14. 0.188 New BSR (RSP12104)
  15. 0.189 Deadhead OG (RSP11463)
  16. 0.191 GMO x Poison Momosa (RSP12500)
  17. 0.193 Skywalker OG (RSP10837)
  18. 0.193 SFVxTK (RSP11072)
  19. 0.195 RKM-2018-013 (RSP11104)
  20. 0.195 GG#4 (RSP11461)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.170 RKM-2018-032 (RSP11124)
  2. 0.188 Kimbo Slice (RSP10997)
  3. 0.189 Skywalker OG (RSP10837)
  4. 0.200 RKM-2018-034 (RSP11126)
  5. 0.216 Pie Hoe (RSP11073)
  6. 0.228 RKM-2018-026 (RSP11118)
  7. 0.247 Kush Hemp E1 (RSP11128)
  8. 0.253 Blueberry Cheesecake (RSP10684)
  9. 0.259 RKM-2018-033 (RSP11125)
  10. 0.270 Blueberry Cheesecake (RSP10680)
  11. 0.272 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.275 Recon (RSP10755)
  13. 0.280 Golden Goat 2 (RSP10991)
  14. 0.283 RKM-2018-004 (RSP11096)
  15. 0.285 Liberty Haze (RSP11000)
  16. 0.290 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.291 RKM-2018-020 (RSP11112)
  18. 0.293 Sour Raspberry (RSP10551)
  19. 0.296 Tygra (RSP10667)
  20. 0.301 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.446 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.445 Cherry Blossom (RSP11323)
  3. 0.441 Cherry Blossom (RSP11328)
  4. 0.436 Unknown--Cherry Wine---002- (RSP11269)
  5. 0.428 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.427 Cherry Blossom (RSP11318)
  7. 0.425 Cherry Blossom (RSP11298)
  8. 0.418 80E (RSP11213)
  9. 0.417 Cherry Blossom (RSP11301)
  10. 0.414 Cherry Blossom (RSP11331)
  11. 0.413 13 Cherries (RSP11442)
  12. 0.412 Cherry Blossom (RSP11312)
  13. 0.412 Cherry Blossom (RSP11274)
  14. 0.411 Cherry Wine (RSP11267)
  15. 0.411 JL 3rd Gen Father (RSP11196)
  16. 0.410 Cherry Blossom (RSP11309)
  17. 0.405 CS (RSP11208)
  18. 0.404 Cherry Blossom (RSP11300)
  19. 0.402 Northern Lights (RSP11501)
  20. 0.402 AVIDEKEL USA (RSP11169)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.410 Cbot-2019-005 (RSP11133)
  2. 0.399 Cherry (RSP11142)
  3. 0.399 JL yellow (RSP11075)
  4. 0.390 Cbot-2019-004 (RSP11132)
  5. 0.379 RKM-2018-027 (RSP11119)
  6. 0.378 RKM-2018-006 (RSP11097)
  7. 0.377 Blueberry Cheesecake (RSP10672)
  8. 0.375 RKM-2018-023 (RSP11115)
  9. 0.375 Cherry (RSP11143)
  10. 0.372 Carmagnola (RSP11037)
  11. 0.367 Carmagnola (RSP10979)
  12. 0.360 RKM-2018-003 (RSP11094)
  13. 0.358 Cbot-2019-001 (RSP11129)
  14. 0.357 Feral (RSP10890)
  15. 0.354 RKM-2018-028 (RSP11120)
  16. 0.354 Italian Kiss (RSP11034)
  17. 0.353 Black Beauty (RSP11035)
  18. 0.351 Monoica (RSP10241)
  19. 0.346 Tisza (RSP11044)
  20. 0.340 RKM-2018-019 (RSP11111)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448254
Overlapping SNPs:
85
Concordance:
81

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495308
Overlapping SNPs:
12
Concordance:
12

Blockchain Registration Information

Transaction ID
575d7df0695ed633b7de62d686876da1109e3fc73aa6615134b9e3027e936255
Stamping Certificate
Download PDF (864.5 KB)
SHASUM Hash
7fb19531c056a10db8355434c0260f919687ca5557a9d8f9bbf532e4a7f5a268
QR code for RSP10988

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