Durban Poison #1

RSP 10996

Grower: DigiPath Labs

General Information

Sample Name
F20160801-04-15
Accession Date
August 28, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
24.9%
CBD + CBDA
0.056%
THCV + THCVA
0.%
CBC + CBCA
0.011%
CBG + CBGA
1.031%
CBN + CBNA
0.09%

Terpenoids

α-Bisabolol
0.005%
Borneol
n/a
Camphene
0.002%
Carene
0.053%
Caryophyllene oxide
0.004%
β-Caryophyllene
0.099%
Fenchol
n/a
Geraniol
0.016%
α-Humulene
0.035%
Limonene
0.071%
Linalool
0.011%
Myrcene
0.107%
α-Phellandrene
n/a
Terpinolene
0.596%
α-Terpineol
n/a
α-Terpinene
0.036%
γ-Terpinene
0.71%
Total Nerolidol
0.006%
Total Ocimene
0.315%
α-Pinene
0.049%
β-Pinene
0.085%

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.03%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0421
male female RSP10996

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.003 Durban Poison 1 (RSP11013)
  2. 0.003 Durban Poison (RSP11226)
  3. 0.006 Durban Poison (RSP10998)
  4. 0.007 Durban Poison (RSP11014)
  5. 0.130 Black Jack (RSP10603)
  6. 0.130 Domnesia (RSP11184)
  7. 0.136 BLACK JACK (RSP11346)
  8. 0.144 RKM-2018-016 (RSP11108)
  9. 0.144 RKM-2018-025 (RSP11117)
  10. 0.153 Gold Cracker (RSP11048)
  11. 0.157 Doug s Varin (RSP11243)
  12. 0.161 Saint Jack (RSP11179)
  13. 0.163 Serious Happiness (RSP10763)
  14. 0.165 Erez (RSP10942)
  15. 0.169 Super Blue Dream (RSP11011)
  16. 0.170 Cheese (RSP10460)
  17. 0.171 Gold Cracker (RSP11041)
  18. 0.172 Whitey (RSP11363)
  19. 0.176 Miss X (RSP10999)
  20. 0.177 Alaska USA (RSP11171)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.007 Durban Poison (RSP11014)
  2. 0.150 Gold Cracker (RSP11048)
  3. 0.169 RKM-2018-027 (RSP11119)
  4. 0.190 Blueberry Cheesecake (RSP10684)
  5. 0.198 Liberty Haze (RSP11000)
  6. 0.214 RKM-2018-023 (RSP11115)
  7. 0.216 CST (RSP11002)
  8. 0.222 Golden Goat 2 (RSP10991)
  9. 0.222 RKM-2018-003 (RSP11094)
  10. 0.230 RKM-2018-020 (RSP11112)
  11. 0.234 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.238 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.240 Pie Hoe (RSP11073)
  14. 0.242 UP Sunrise (RSP10989)
  15. 0.244 RKM-2018-018 (RSP11110)
  16. 0.251 Recon (RSP10755)
  17. 0.254 Blueberry Cheesecake (RSP10680)
  18. 0.254 RKM-2018-029 (RSP11121)
  19. 0.255 RKM-2018-002 (RSP11093)
  20. 0.255 RKM-2018-006 (RSP11097)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.412 Cherry Blossom (RSP11323)
  2. 0.409 80E (RSP11213)
  3. 0.405 Cherry Blossom (RSP11314)
  4. 0.389 80E (RSP11212)
  5. 0.384 Cherry Blossom (RSP11306)
  6. 0.381 Cherry Blossom (RSP11318)
  7. 0.379 80E (RSP11211)
  8. 0.378 Cherry Blossom (RSP11333)
  9. 0.371 Cherry Blossom (RSP11311)
  10. 0.367 Cherry Blossom (RSP11317)
  11. 0.366 Feral (RSP11205)
  12. 0.366 Cherry Blossom (RSP11328)
  13. 0.363 CS (RSP11208)
  14. 0.360 Feral (RSP11206)
  15. 0.359 Cbot-2019-005 (RSP11133)
  16. 0.354 Kush Hemp E1 (RSP11128)
  17. 0.353 AVIDEKEL 2 0 (RSP11174)
  18. 0.350 Cherry Blossom (RSP11325)
  19. 0.348 Cherry Blossom (RSP11322)
  20. 0.347 Cherry Blossom (RSP11274)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.384 Cbot-2019-005 (RSP11133)
  2. 0.362 Kush Hemp E1 (RSP11128)
  3. 0.340 Carmagnola (RSP11037)
  4. 0.336 JL yellow (RSP11075)
  5. 0.335 Monoica (RSP10241)
  6. 0.335 Ivory (RSP10668)
  7. 0.333 Feral (RSP10890)
  8. 0.326 Futura 75 (RSP10664)
  9. 0.324 Lovrin (RSP10658)
  10. 0.321 Jiangji (RSP10653)
  11. 0.319 Kyrgyz Gold (RSP11054)
  12. 0.315 Carmagnola (RSP10979)
  13. 0.314 USO 31 (RSP10981)
  14. 0.312 Tisza (RSP11044)
  15. 0.309 Santhica27 (RSP11047)
  16. 0.309 Tisza (RSP10659)
  17. 0.306 Cbot-2019-001 (RSP11129)
  18. 0.305 RKM-2018-026 (RSP11118)
  19. 0.303 Sour Raspberry (RSP10551)
  20. 0.299 Fedora 17 (RSP10661)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346957
Overlapping SNPs:
60
Concordance:
58

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495198
Overlapping SNPs:
10
Concordance:
10

Blockchain Registration Information

Transaction ID
6425bcade14b86f15c102780907b4d64cae20464712777a75d7bb67ca13fb9dd
Stamping Certificate
Download PDF (834.5 KB)
SHASUM Hash
48e405783986faf9a8ef1f770e830ea71089cf29fd7f02357cb3bde5c4f0d28a
QR code for RSP10996

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