Blue Dream

RSP 11005

Grower: Native Roots

General Information

Sample Name
Native Roots_31JAN2017
Accession Date
September 17, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.82%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0307
male female RSP11005

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-1

UniProt

c.1181C>A p.Pro394His missense variant moderate contig1891 886861

IGV: Start, Jump

G/T
NGS:
0.002
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.000 Blue Dream (RSP11008)
  2. 0.000 Blue Dream (RSP11032)
  3. 0.000 Blue Dream (RSP11227)
  4. 0.000 Blue Dream (RSP11342)
  5. 0.001 Blue Dream (RSP11033)
  6. 0.001 Snoops Dream (RSP11031)
  7. 0.001 Blue Dream (RSP11010)
  8. 0.001 Blue Dream (RSP11012)
  9. 0.002 Blue Dream (RSP11009)
  10. 0.002 Blue Dream (RSP11007)
  11. 0.003 Snoops Dream (RSP11003)
  12. 0.003 Blue Dream (RSP11017)
  13. 0.004 Super Blue Dream (RSP11011)
  14. 0.004 Blue Dream (RSP11006)
  15. 0.005 Blue Dream (RSP11004)
  16. 0.162 Serious Happiness (RSP10763)
  17. 0.171 Golden Goat 2 (RSP10991)
  18. 0.185 UP Sunrise (RSP10989)
  19. 0.190 Doug s Varin (RSP11243)
  20. 0.193 Italian Kiss (RSP11034)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.001 Blue Dream (RSP11033)
  2. 0.163 Golden Goat 2 (RSP10991)
  3. 0.191 UP Sunrise (RSP10989)
  4. 0.197 Italian Kiss (RSP11034)
  5. 0.214 CST (RSP11002)
  6. 0.216 Gold Cracker (RSP11048)
  7. 0.221 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.226 RKM-2018-009 (RSP11100)
  9. 0.233 RKM-2018-027 (RSP11119)
  10. 0.243 RKM-2018-018 (RSP11110)
  11. 0.243 RKM-2018-003 (RSP11094)
  12. 0.247 Durban Poison (RSP11014)
  13. 0.249 RKM-2018-006 (RSP11097)
  14. 0.253 RKM-2018-029 (RSP11121)
  15. 0.255 RKM-2018-020 (RSP11112)
  16. 0.259 RKM-2018-033 (RSP11125)
  17. 0.261 Blueberry Cheesecake (RSP10684)
  18. 0.263 Sour Raspberry (RSP10551)
  19. 0.266 QUEEN JESUS (RSP10105)
  20. 0.267 RKM-2018-023 (RSP11115)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.450 Cherry Blossom (RSP11311)
  2. 0.432 Cherry Blossom (RSP11328)
  3. 0.419 Cherry Blossom (RSP11314)
  4. 0.411 Cherry Blossom (RSP11323)
  5. 0.408 Cherry Blossom (RSP11298)
  6. 0.408 Cherry Blossom (RSP11317)
  7. 0.407 Cherry Blossom (RSP11312)
  8. 0.406 Cherry Blossom (RSP11334)
  9. 0.406 Unknown- Cherry Wine - 001 (RSP11268)
  10. 0.403 Unknown- Cherry Wine - 002 (RSP11269)
  11. 0.401 CS (RSP11208)
  12. 0.397 80E (RSP11213)
  13. 0.396 Cherry Blossom (RSP11318)
  14. 0.394 Cherry Blossom (RSP11308)
  15. 0.394 Cherry Blossom (RSP11333)
  16. 0.394 Cherry Blossom (RSP11300)
  17. 0.392 Cherry Blossom (RSP11335)
  18. 0.392 Carmaleonte (RSP11207)
  19. 0.392 Unknown- Cherry Wine - 003 (RSP11270)
  20. 0.391 Cherry Blossom (RSP11309)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.384 Cbot-2019-005 (RSP11133)
  2. 0.379 Kush Hemp E1 (RSP11128)
  3. 0.367 Santhica27 (RSP11047)
  4. 0.357 Feral (RSP10890)
  5. 0.352 Cherry (RSP11142)
  6. 0.345 Carmagnola (RSP11037)
  7. 0.343 Monoica (RSP10241)
  8. 0.340 RKM-2018-026 (RSP11118)
  9. 0.339 Ivory (RSP10668)
  10. 0.338 RKM-2018-002 (RSP11093)
  11. 0.338 RKM-2018-019 (RSP11111)
  12. 0.335 Fedora 17 (RSP10661)
  13. 0.335 Cherry (RSP11143)
  14. 0.334 Kyrgyz Gold (RSP11054)
  15. 0.330 Skywalker OG (RSP10837)
  16. 0.330 Tisza (RSP10659)
  17. 0.330 Futura 75 (RSP10664)
  18. 0.329 Lovrin (RSP10658)
  19. 0.325 Jiangji (RSP10653)
  20. 0.325 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
119
Concordance:
116

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
495ea82a5472dbff8b6096a2f6446bf222d13a422a0fdfb6ea3c5cf3a805f6ec
Stamping Certificate
Download PDF (863.3 KB)
SHASUM Hash
9d4cd8d1aa09147399c0a1e3740c89ea869359a627cef2bd2c8156c563ec4f47
QR code for RSP11005

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