Blue Dream

RSP 11012

Grower: Garden Path

General Information

Sample Name
Blue Dream Len Garden Path
Accession Date
September 17, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.54%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0352
male female RSP11012

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.001 Blue Dream (RSP11005)
  2. 0.002 Blue Dream (RSP11227)
  3. 0.002 Blue Dream (RSP11342)
  4. 0.003 Blue Dream (RSP11032)
  5. 0.003 Blue Dream (RSP11017)
  6. 0.004 Snoops Dream (RSP11031)
  7. 0.004 Blue Dream (RSP11033)
  8. 0.004 Snoops Dream (RSP11003)
  9. 0.004 Blue Dream (RSP11008)
  10. 0.005 Blue Dream (RSP11007)
  11. 0.005 Blue Dream (RSP11004)
  12. 0.005 Blue Dream (RSP11009)
  13. 0.006 Super Blue Dream (RSP11011)
  14. 0.006 Blue Dream (RSP11006)
  15. 0.009 Blue Dream (RSP11010)
  16. 0.143 Serious Happiness (RSP10763)
  17. 0.167 Doug s Varin (RSP11243)
  18. 0.167 Golden Goat 2 (RSP10991)
  19. 0.181 UP Sunrise (RSP10989)
  20. 0.193 OR (RSP10940)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.005 Blue Dream (RSP11033)
  2. 0.164 Golden Goat 2 (RSP10991)
  3. 0.180 UP Sunrise (RSP10989)
  4. 0.201 Italian Kiss (RSP11034)
  5. 0.211 Gold Cracker (RSP11048)
  6. 0.215 Hermaphrodite Research Sample1 (RSP11049)
  7. 0.223 CST (RSP11002)
  8. 0.228 RKM-2018-027 (RSP11119)
  9. 0.234 RKM-2018-009 (RSP11100)
  10. 0.238 RKM-2018-018 (RSP11110)
  11. 0.241 Durban Poison (RSP11014)
  12. 0.242 RKM-2018-003 (RSP11094)
  13. 0.244 Blueberry Cheesecake (RSP10684)
  14. 0.247 RKM-2018-006 (RSP11097)
  15. 0.250 RKM-2018-020 (RSP11112)
  16. 0.252 RKM-2018-029 (RSP11121)
  17. 0.259 RKM-2018-033 (RSP11125)
  18. 0.261 Sour Raspberry (RSP10551)
  19. 0.262 QUEEN JESUS (RSP10105)
  20. 0.262 Liberty Haze (RSP11000)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.444 Cherry Blossom (RSP11311)
  2. 0.432 Cherry Blossom (RSP11328)
  3. 0.415 Cherry Blossom (RSP11314)
  4. 0.411 80E (RSP11213)
  5. 0.408 Cherry Blossom (RSP11298)
  6. 0.408 Cherry Blossom (RSP11317)
  7. 0.406 Unknown- Cherry Wine - 001 (RSP11268)
  8. 0.404 Cherry Blossom (RSP11312)
  9. 0.401 Cherry Blossom (RSP11334)
  10. 0.398 Unknown- Cherry Wine - 003 (RSP11270)
  11. 0.397 80E (RSP11211)
  12. 0.397 Cherry Blossom (RSP11323)
  13. 0.396 Unknown- Cherry Wine - 002 (RSP11269)
  14. 0.395 Carmaleonte (RSP11207)
  15. 0.392 Cherry Blossom (RSP11309)
  16. 0.390 CS (RSP11208)
  17. 0.388 Cherry Blossom (RSP11318)
  18. 0.382 Cherry Blossom (RSP11308)
  19. 0.382 Feral (RSP11205)
  20. 0.382 Cherry Blossom (RSP11300)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.392 Kush Hemp E1 (RSP11128)
  2. 0.392 Cbot-2019-005 (RSP11133)
  3. 0.363 Santhica27 (RSP11047)
  4. 0.358 Cherry (RSP11142)
  5. 0.353 Feral (RSP10890)
  6. 0.349 Monoica (RSP10241)
  7. 0.346 Ivory (RSP10668)
  8. 0.345 RKM-2018-026 (RSP11118)
  9. 0.343 Carmagnola (RSP11037)
  10. 0.341 Fedora 17 (RSP10661)
  11. 0.339 Kyrgyz Gold (RSP11054)
  12. 0.335 RKM-2018-002 (RSP11093)
  13. 0.334 Futura 75 (RSP10664)
  14. 0.330 Cherry (RSP11143)
  15. 0.327 Tisza (RSP11044)
  16. 0.326 KYRG-11 (RSP11051)
  17. 0.324 RKM-2018-019 (RSP11111)
  18. 0.323 Skywalker OG (RSP10837)
  19. 0.322 Tisza (RSP10659)
  20. 0.321 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
73
Concordance:
72

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495196
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
a17387bf2d1de5cab15c88f99f12637e5140892b082ef5b41ed2f8acd0d0d911
Stamping Certificate
Download PDF (850.6 KB)
SHASUM Hash
a730161f0a7640f0d425709fbadbe506c05b6aae1db7b369cb208c5dd2575995
QR code for RSP11012

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