Advanced Strain Search

Durban Poison #1

RSP 11013

Grower: DigiPath Labs

General Information

Sample Name
F20160801-04-15
Accession Date
September 17, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
24.9%
CBD + CBDA
0.056%
THCV + THCVA
0.%
CBC + CBCA
0.011%
CBG + CBGA
1.031%
CBN + CBNA
0.09%

Terpenoids

α-Bisabolol
0.005%
Borneol
n/a
Camphene
0.002%
Carene
0.053%
Caryophyllene oxide
0.004%
β-Caryophyllene
0.099%
Fenchol
n/a
Geraniol
0.016%
α-Humulene
0.035%
Limonene
0.071%
Linalool
0.011%
Myrcene
0.107%
α-Phellandrene
n/a
Terpinolene
0.596%
α-Terpineol
n/a
α-Terpinene
0.036%
γ-Terpinene
0.71%
Total Nerolidol
0.006%
Total Ocimene
0.315%
α-Pinene
0.049%
β-Pinene
0.085%

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0441
male female RSP11013

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.042 0.083 0.125 0.167
clone distance sibling distance more distant
  1. 0.004 Durban Poison (RSP11226)
  2. 0.006 Durban Poison (RSP10998)
  3. 0.008 Durban Poison #1 (RSP10996)
  4. 0.008 Durban Poison (RSP11014)
  5. 0.123 Lift (RSP11378)
  6. 0.125 Domnesia (RSP11184)
  7. 0.129 Electra (RSP11366)
  8. 0.132 Black Jack (RSP10603)
  9. 0.138 Serious Happiness (RSP10763)
  10. 0.139 RKM-2018-016 (RSP11108)
  11. 0.140 BLACK JACK (RSP11346)
  12. 0.140 RKM-2018-025 (RSP11117)
  13. 0.145 Doug s Varin (RSP11243)
  14. 0.146 Joy (RSP11380)
  15. 0.148 Gold Cracker (RSP11048)
  16. 0.148 Whitey (RSP11363)
  17. 0.152 UnObtanium (RSP11611)
  18. 0.157 Lifter (RSP11365)
  19. 0.160 Suver Haze (RSP11364)
  20. 0.161 Trump x Trump (RSP11466)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.008 Durban Poison (RSP11014)
  2. 0.153 Liberty Haze (RSP11000)
  3. 0.161 Gold Cracker (RSP11048)
  4. 0.181 Blueberry Cheesecake (RSP10684)
  5. 0.188 RKM-2018-027 (RSP11119)
  6. 0.192 CST (RSP11002)
  7. 0.196 UP Sunrise (RSP10989)
  8. 0.196 Golden Goat 2 (RSP10991)
  9. 0.211 Hermaphrodite ResearchSample2 (RSP11050)
  10. 0.217 RKM-2018-003 (RSP11094)
  11. 0.226 RKM-2018-023 (RSP11115)
  12. 0.229 RKM-2018-020 (RSP11112)
  13. 0.237 Blue Dream (RSP11033)
  14. 0.238 Blueberry Cheesecake (RSP10672)
  15. 0.243 RKM-2018-004 (RSP11096)
  16. 0.244 Cbot-2019-004 (RSP11132)
  17. 0.244 Queen Jesus (RSP10105)
  18. 0.249 RKM-2018-029 (RSP11121)
  19. 0.249 Pie Hoe (RSP11073)
  20. 0.250 RKM-2018-031 (RSP11123)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.413 80E (RSP11213)
  2. 0.388 Cherry Blossom (RSP11323)
  3. 0.385 80E (RSP11212)
  4. 0.378 80E (RSP11211)
  5. 0.373 JL yellow (RSP11075)
  6. 0.373 Feral (RSP10891)
  7. 0.368 R1in136 (SRR14708226)
  8. 0.366 Cherry Blossom (RSP11318)
  9. 0.361 Feral (RSP11205)
  10. 0.360 CS (RSP11208)
  11. 0.360 JL 3rd Gen Mother (RSP11214)
  12. 0.358 Feral (RSP10892)
  13. 0.357 Feral (RSP11206)
  14. 0.354 Beniko (SRR14708275)
  15. 0.354 GMO x Garlic Breath (RSP12507)
  16. 0.354 VIR 223 - Bernburgskaya Odnodomnaya - bm (SRR14708217)
  17. 0.353 R1in136 (SRR14708227)
  18. 0.352 Santhica 27 (SRR14708211)
  19. 0.351 Carmagnola (RSP11037)
  20. 0.351 R1in136 (SRR14708237)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.363 Kush Hemp E1 (RSP11128)
  2. 0.362 JL yellow (RSP11075)
  3. 0.360 Cbot-2019-005 (RSP11133)
  4. 0.350 Carmagnola (RSP11037)
  5. 0.347 Feral (RSP10890)
  6. 0.333 Ivory (RSP10668)
  7. 0.331 Monoica (RSP10241)
  8. 0.327 Futura 75 (RSP10664)
  9. 0.315 RKM-2018-026 (RSP11118)
  10. 0.315 Lovrin (RSP10658)
  11. 0.313 Skywalker OG (RSP10837)
  12. 0.308 RKM-2018-034 (RSP11126)
  13. 0.306 Santhica27 (RSP11047)
  14. 0.304 Kyrgyz Gold (RSP11054)
  15. 0.304 The Gift (RSP10988)
  16. 0.302 USO 31 (RSP10981)
  17. 0.302 RKM-2018-022 (RSP11114)
  18. 0.300 Sour Raspberry (RSP10551)
  19. 0.298 Fedora 17 (RSP10661)
  20. 0.292 Tisza (RSP11044)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346689
Overlapping SNPs:
68
Concordance:
67

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495285
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
042179e973bd8732d672517c8108ff73541eb43d5b8617949cf87ad1aa0429f7
Stamping Certificate
Download PDF (844.3 KB)
SHASUM Hash
1b68f4b39dd03f70ed5c42be7143c391b8ec36e3e817676b95a5787c608d7720
QR code for RSP11013

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