Skunk#18

RSP 11030

Grower: The Nature Farm

General Information

Accession Date
November 19, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.65%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0561
male female RSP11030

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.005 Skunk 18 (RSP11038)
  2. 0.215 RKM-2018-023 (RSP11115)
  3. 0.231 Golden Goat 2 (RSP10991)
  4. 0.237 Square Wave (RSP11344)
  5. 0.243 Gold Cracker (RSP11041)
  6. 0.250 Citrix (RSP11177)
  7. 0.251 Durban Poison (RSP11014)
  8. 0.251 Durban Poison 1 (RSP11013)
  9. 0.254 Glueberry OG (RSP11222)
  10. 0.255 RKM-2018-018 (RSP11110)
  11. 0.255 Gold Cracker (RSP11048)
  12. 0.256 RKM-2018-003 (RSP11094)
  13. 0.256 Cheese (RSP10460)
  14. 0.257 Jamaican Lions Ancestor (RSP11127)
  15. 0.260 Alaska USA (RSP11171)
  16. 0.260 Cbot-2019-006 (RSP11134)
  17. 0.260 Durban Poison 1 (RSP10996)
  18. 0.261 UP Wendigo (RSP11261)
  19. 0.262 Domnesia (RSP11184)
  20. 0.263 Durban Poison (RSP10998)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.006 Skunk 18 (RSP11038)
  2. 0.211 RKM-2018-023 (RSP11115)
  3. 0.231 Golden Goat 2 (RSP10991)
  4. 0.250 Gold Cracker (RSP11048)
  5. 0.251 RKM-2018-033 (RSP11125)
  6. 0.254 RKM-2018-003 (RSP11094)
  7. 0.254 Durban Poison (RSP11014)
  8. 0.263 Cbot-2019-006 (RSP11134)
  9. 0.264 RKM-2018-018 (RSP11110)
  10. 0.269 Blueberry Cheesecake (RSP10684)
  11. 0.269 RKM-2018-027 (RSP11119)
  12. 0.269 RKM-2018-020 (RSP11112)
  13. 0.270 The Gift (RSP10988)
  14. 0.275 Pie Hoe (RSP11073)
  15. 0.277 Liberty Haze (RSP11000)
  16. 0.277 RKM-2018-028 (RSP11120)
  17. 0.279 Blueberry Cheesecake (RSP10680)
  18. 0.279 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.281 Kimbo Slice (RSP10997)
  20. 0.282 CST (RSP11002)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.476 Cherry Blossom (RSP11317)
  2. 0.474 Cherry Blossom (RSP11306)
  3. 0.470 Cherry Blossom (RSP11333)
  4. 0.460 Cherry Blossom (RSP11324)
  5. 0.459 Cherry Blossom (RSP11311)
  6. 0.458 Cherry Blossom (RSP11323)
  7. 0.456 Cherry Blossom (RSP11334)
  8. 0.455 Cherry Blossom (RSP11314)
  9. 0.455 Cherry Blossom (RSP11322)
  10. 0.455 Cherry Blossom (RSP11318)
  11. 0.454 Cherry Blossom (RSP11325)
  12. 0.454 Cherry Blossom (RSP11330)
  13. 0.451 Cherry Blossom (RSP11308)
  14. 0.444 Cherry Blossom (RSP11335)
  15. 0.438 Cherry Blossom (RSP11328)
  16. 0.435 Unknown- Cherry Wine - 001 (RSP11268)
  17. 0.429 Cherry Blossom (RSP11301)
  18. 0.422 Cherry Blossom (RSP11329)
  19. 0.421 Cherry Blossom (RSP11327)
  20. 0.419 Cherry Blossom (RSP11274)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.400 Cbot-2019-005 (RSP11133)
  2. 0.391 Carmagnola (RSP11037)
  3. 0.388 Cherry (RSP11142)
  4. 0.385 Feral (RSP10890)
  5. 0.383 USO 31 (RSP10981)
  6. 0.381 Monoica (RSP10241)
  7. 0.377 Kyrgyz Gold (RSP11054)
  8. 0.371 Santhica27 (RSP11047)
  9. 0.370 Cherry (RSP11143)
  10. 0.368 Lovrin (RSP10658)
  11. 0.368 Cbot-2019-001 (RSP11129)
  12. 0.368 Futura 75 (RSP10664)
  13. 0.368 Tisza (RSP11044)
  14. 0.366 Blueberry Cheesecake (RSP10672)
  15. 0.366 Ivory (RSP10668)
  16. 0.363 Tisza (RSP10659)
  17. 0.363 Jiangji (RSP10653)
  18. 0.362 Fedora 17 (RSP10661)
  19. 0.358 Carmagnola (RSP10979)
  20. 0.349 KYRG-11 (RSP11051)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349067
Overlapping SNPs:
112
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495285
Overlapping SNPs:
11
Concordance:
11

Blockchain Registration Information

Transaction ID
f7066261ba3789e181f6cbcbc72e4c712e29e8722dfe9218eaa92b5a074321ef
Stamping Certificate
Download PDF (857.9 KB)
SHASUM Hash
ee133b652522a3a540ee2a9d8f8f332ca8e28202220b3d12a989c5371c83fd66
QR code for RSP11030

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