Snoops Dream

RSP 11031

Grower: Avitas

General Information

Accession Date
November 19, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

THC + THCA
20.4%
CBD + CBDA
0.09%
THCV + THCVA
n/a
CBC + CBCA
n/a
CBG + CBGA
n/a
CBN + CBNA
n/a

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.71%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0414
male female RSP11031

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.001 Blue Dream (RSP11032)
  2. 0.001 Blue Dream (RSP11005)
  3. 0.002 Blue Dream (RSP11008)
  4. 0.002 Blue Dream (RSP11342)
  5. 0.002 Blue Dream (RSP11007)
  6. 0.002 Blue Dream (RSP11227)
  7. 0.003 Blue Dream (RSP11009)
  8. 0.003 Blue Dream (RSP11033)
  9. 0.004 Blue Dream (RSP11006)
  10. 0.004 Blue Dream (RSP11012)
  11. 0.004 Snoops Dream (RSP11003)
  12. 0.005 Blue Dream (RSP11004)
  13. 0.007 Super Blue Dream (RSP11011)
  14. 0.007 Blue Dream (RSP11017)
  15. 0.008 Blue Dream (RSP11010)
  16. 0.163 Serious Happiness (RSP10763)
  17. 0.174 Golden Goat 2 (RSP10991)
  18. 0.190 Italian Kiss (RSP10990)
  19. 0.191 Doug s Varin (RSP11243)
  20. 0.195 UP Sunrise (RSP10989)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.003 Blue Dream (RSP11033)
  2. 0.166 Golden Goat 2 (RSP10991)
  3. 0.198 UP Sunrise (RSP10989)
  4. 0.201 Italian Kiss (RSP11034)
  5. 0.207 Gold Cracker (RSP11048)
  6. 0.211 CST (RSP11002)
  7. 0.221 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.226 RKM-2018-009 (RSP11100)
  9. 0.227 RKM-2018-027 (RSP11119)
  10. 0.231 RKM-2018-018 (RSP11110)
  11. 0.242 Durban Poison (RSP11014)
  12. 0.245 RKM-2018-003 (RSP11094)
  13. 0.246 RKM-2018-029 (RSP11121)
  14. 0.246 RKM-2018-006 (RSP11097)
  15. 0.254 RKM-2018-023 (RSP11115)
  16. 0.255 RKM-2018-020 (RSP11112)
  17. 0.256 RKM-2018-033 (RSP11125)
  18. 0.259 Blueberry Cheesecake (RSP10684)
  19. 0.260 Sour Raspberry (RSP10551)
  20. 0.262 Skunk 18 (RSP11038)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.472 Cherry Blossom (RSP11311)
  2. 0.446 Cherry Blossom (RSP11328)
  3. 0.435 Cherry Blossom (RSP11334)
  4. 0.435 Cherry Blossom (RSP11314)
  5. 0.422 Cherry Blossom (RSP11317)
  6. 0.418 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.417 Cherry Blossom (RSP11298)
  8. 0.416 Cherry Blossom (RSP11308)
  9. 0.412 Cherry Blossom (RSP11335)
  10. 0.412 Cherry Blossom (RSP11312)
  11. 0.412 Cherry Blossom (RSP11333)
  12. 0.410 Unknown- Cherry Wine - 002 (RSP11269)
  13. 0.410 Cherry Blossom (RSP11323)
  14. 0.409 Cherry Blossom (RSP11309)
  15. 0.406 Unknown- Cherry Wine - 003 (RSP11270)
  16. 0.404 Carmaleonte (RSP11207)
  17. 0.403 80E (RSP11213)
  18. 0.402 Cherry Blossom (RSP11300)
  19. 0.399 CS (RSP11208)
  20. 0.397 Cherry Blossom (RSP11318)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.390 Cbot-2019-005 (RSP11133)
  2. 0.372 Kush Hemp E1 (RSP11128)
  3. 0.370 Feral (RSP10890)
  4. 0.363 Santhica27 (RSP11047)
  5. 0.355 Cherry (RSP11142)
  6. 0.351 Ivory (RSP10668)
  7. 0.347 Monoica (RSP10241)
  8. 0.343 Carmagnola (RSP11037)
  9. 0.341 Kyrgyz Gold (RSP11054)
  10. 0.338 Fedora 17 (RSP10661)
  11. 0.338 Tisza (RSP10659)
  12. 0.334 Cherry (RSP11143)
  13. 0.334 RKM-2018-019 (RSP11111)
  14. 0.333 KYRG-11 (RSP11051)
  15. 0.332 Futura 75 (RSP10664)
  16. 0.329 RKM-2018-026 (RSP11118)
  17. 0.328 Lovrin (RSP10658)
  18. 0.326 RKM-2018-002 (RSP11093)
  19. 0.325 Carmagnola (RSP10979)
  20. 0.324 Skywalker OG (RSP10837)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
116
Concordance:
113

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
6864a53fbb856bdb1872fb97885016ca3c1cf3673303542bab836fd77ca0d3c6
Stamping Certificate
Download PDF (867.4 KB)
SHASUM Hash
788af2d18ac1b729ab55658bb8d207a4232cace17b8509e1f000d42a04494dc0
QR code for RSP11031

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