Blue Dream

RSP 11032

Grower: Native Roots

General Information

Sample Name
Native Roots_31JAN2017
Accession Date
November 19, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.75%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0326
male female RSP11032

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.000 Blue Dream (RSP11227)
  2. 0.001 Blue Dream (RSP11005)
  3. 0.001 Blue Dream (RSP11342)
  4. 0.001 Blue Dream (RSP11012)
  5. 0.001 Snoops Dream (RSP11031)
  6. 0.002 Blue Dream (RSP11008)
  7. 0.002 Snoops Dream (RSP11003)
  8. 0.002 Blue Dream (RSP11033)
  9. 0.003 Blue Dream (RSP11010)
  10. 0.003 Blue Dream (RSP11007)
  11. 0.004 Blue Dream (RSP11009)
  12. 0.005 Blue Dream (RSP11004)
  13. 0.005 Blue Dream (RSP11017)
  14. 0.007 Super Blue Dream (RSP11011)
  15. 0.008 Blue Dream (RSP11006)
  16. 0.175 Serious Happiness (RSP10763)
  17. 0.191 Golden Goat 2 (RSP10991)
  18. 0.199 UP Sunrise (RSP10989)
  19. 0.205 Italian Kiss (RSP10990)
  20. 0.207 OR 05MAY2017 (RSP10940)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.003 Blue Dream (RSP11033)
  2. 0.189 Golden Goat 2 (RSP10991)
  3. 0.202 Italian Kiss (RSP11034)
  4. 0.206 UP Sunrise (RSP10989)
  5. 0.225 Gold Cracker (RSP11048)
  6. 0.226 CST (RSP11002)
  7. 0.229 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.247 RKM-2018-009 (RSP11100)
  9. 0.247 RKM-2018-027 (RSP11119)
  10. 0.250 Blueberry Cheesecake (RSP10684)
  11. 0.252 RKM-2018-018 (RSP11110)
  12. 0.259 RKM-2018-003 (RSP11094)
  13. 0.259 Durban Poison (RSP11014)
  14. 0.260 Sour Raspberry (RSP10551)
  15. 0.264 RKM-2018-006 (RSP11097)
  16. 0.273 Queen Jesus (RSP10105)
  17. 0.275 RKM-2018-033 (RSP11125)
  18. 0.277 RKM-2018-020 (RSP11112)
  19. 0.277 RKM-2018-029 (RSP11121)
  20. 0.283 Liberty Haze (RSP11000)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.459 Cherry Blossom (RSP11311)
  2. 0.455 Cherry Blossom (RSP11328)
  3. 0.438 BagSeed (RSP12627)
  4. 0.438 Cherry Blossom (RSP11312)
  5. 0.430 Cherry Blossom (RSP11314)
  6. 0.428 Cherry Blossom (RSP11298)
  7. 0.422 Cherry Blossom (RSP11323)
  8. 0.422 80E (RSP11213)
  9. 0.419 Cherry Blossom (RSP11309)
  10. 0.418 Unknown--Cherry Wine---003- (RSP11270)
  11. 0.417 Cherry Blossom (RSP11335)
  12. 0.417 Cherry Blossom (RSP11308)
  13. 0.417 CS (RSP11208)
  14. 0.417 Cherry Blossom (RSP11334)
  15. 0.417 Cherry Blossom (RSP11317)
  16. 0.412 Carmaleonte (RSP11207)
  17. 0.411 Unknown--Cherry Wine---001- (RSP11268)
  18. 0.411 80E (RSP11211)
  19. 0.410 Candy Kush (RSP11492)
  20. 0.408 Feral (RSP11205)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.393 Cbot-2019-005 (RSP11133)
  2. 0.392 Kush Hemp E1 (RSP11128)
  3. 0.388 Feral (RSP10890)
  4. 0.379 Santhica27 (RSP11047)
  5. 0.373 RKM-2018-026 (RSP11118)
  6. 0.368 Monoica (RSP10241)
  7. 0.365 Carmagnola (RSP11037)
  8. 0.362 Carmagnola (RSP10979)
  9. 0.358 RKM-2018-019 (RSP11111)
  10. 0.357 Fedora 17 (RSP10661)
  11. 0.353 KYRG-11 (RSP11051)
  12. 0.351 Ivory (RSP10668)
  13. 0.351 Kyrgyz Gold (RSP11054)
  14. 0.350 Futura 75 (RSP10664)
  15. 0.348 Skywalker OG (RSP10837)
  16. 0.347 RKM-2018-002 (RSP11093)
  17. 0.346 RKM-2018-022 (RSP11114)
  18. 0.344 USO 31 (RSP10981)
  19. 0.342 Tisza (RSP11044)
  20. 0.342 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
126
Concordance:
123

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
1713b37853bc7a42e09b42583d90c24ce44df165d3907d9d7794594862036507
Stamping Certificate
Download PDF (844.5 KB)
SHASUM Hash
32f56016be143af5586e09261e07daccbde1437725b31c412e04b0a56f7bf0f5
QR code for RSP11032

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