Blue Dream

RSP 11032

Grower: Native Roots

General Information

Sample Name
Native Roots_31JAN2017
Accession Date
November 19, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Common
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.75%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0326
male female RSP11032

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.187A>C p.Ile63Leu missense variant moderate contig741 4417641

IGV: Start, Jump

T/G
NGS:
0.059
C90:
0.679

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.000 Blue Dream (RSP11005)
  2. 0.001 Snoops Dream (RSP11031)
  3. 0.001 Blue Dream (RSP11033)
  4. 0.001 Blue Dream (RSP11227)
  5. 0.002 Blue Dream (RSP11342)
  6. 0.002 Blue Dream (RSP11008)
  7. 0.002 Blue Dream (RSP11007)
  8. 0.003 Blue Dream (RSP11009)
  9. 0.003 Blue Dream (RSP11017)
  10. 0.003 Blue Dream (RSP11004)
  11. 0.003 Snoops Dream (RSP11003)
  12. 0.003 Blue Dream (RSP11012)
  13. 0.004 Blue Dream (RSP11010)
  14. 0.005 Blue Dream (RSP11006)
  15. 0.006 Super Blue Dream (RSP11011)
  16. 0.178 Serious Happiness (RSP10763)
  17. 0.184 Golden Goat 2 (RSP10991)
  18. 0.193 Italian Kiss (RSP10990)
  19. 0.193 UP Sunrise (RSP10989)
  20. 0.194 Italian Kiss (RSP11034)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.001 Blue Dream (RSP11033)
  2. 0.175 Golden Goat 2 (RSP10991)
  3. 0.195 UP Sunrise (RSP10989)
  4. 0.197 Italian Kiss (RSP11034)
  5. 0.210 Gold Cracker (RSP11048)
  6. 0.215 CST (RSP11002)
  7. 0.227 RKM-2018-009 (RSP11100)
  8. 0.228 Hermaphrodite Research Sample1 (RSP11049)
  9. 0.229 RKM-2018-027 (RSP11119)
  10. 0.242 RKM-2018-018 (RSP11110)
  11. 0.246 Durban Poison (RSP11014)
  12. 0.249 RKM-2018-003 (RSP11094)
  13. 0.254 RKM-2018-006 (RSP11097)
  14. 0.258 RKM-2018-029 (RSP11121)
  15. 0.262 RKM-2018-020 (RSP11112)
  16. 0.262 RKM-2018-033 (RSP11125)
  17. 0.263 Sour Raspberry (RSP10551)
  18. 0.265 Blueberry Cheesecake (RSP10684)
  19. 0.268 RKM-2018-023 (RSP11115)
  20. 0.268 JL yellow (RSP11075)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.477 Cherry Blossom (RSP11311)
  2. 0.453 Cherry Blossom (RSP11328)
  3. 0.441 Cherry Blossom (RSP11314)
  4. 0.440 Cherry Blossom (RSP11312)
  5. 0.437 Cherry Blossom (RSP11298)
  6. 0.436 Cherry Blossom (RSP11334)
  7. 0.435 Cherry Blossom (RSP11323)
  8. 0.431 Cherry Blossom (RSP11308)
  9. 0.429 Cherry Blossom (RSP11317)
  10. 0.428 Cherry Blossom (RSP11335)
  11. 0.424 Unknown- Cherry Wine - 001 (RSP11268)
  12. 0.423 Unknown- Cherry Wine - 002 (RSP11269)
  13. 0.420 Unknown- Cherry Wine - 003 (RSP11270)
  14. 0.418 Cherry Blossom (RSP11309)
  15. 0.415 Cherry Blossom (RSP11318)
  16. 0.412 Cherry Blossom (RSP11333)
  17. 0.409 Cherry Blossom (RSP11300)
  18. 0.404 CS (RSP11208)
  19. 0.404 Carmaleonte (RSP11207)
  20. 0.400 Cherry Blossom (RSP11324)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.398 Cbot-2019-005 (RSP11133)
  2. 0.385 Kush Hemp E1 (RSP11128)
  3. 0.372 Santhica27 (RSP11047)
  4. 0.364 Feral (RSP10890)
  5. 0.353 Cherry (RSP11142)
  6. 0.351 Monoica (RSP10241)
  7. 0.346 Carmagnola (RSP11037)
  8. 0.345 Cherry (RSP11143)
  9. 0.343 RKM-2018-026 (RSP11118)
  10. 0.342 Ivory (RSP10668)
  11. 0.341 RKM-2018-019 (RSP11111)
  12. 0.337 RKM-2018-002 (RSP11093)
  13. 0.336 Skywalker OG (RSP10837)
  14. 0.336 Fedora 17 (RSP10661)
  15. 0.334 Futura 75 (RSP10664)
  16. 0.334 Carmagnola (RSP10979)
  17. 0.333 Kyrgyz Gold (RSP11054)
  18. 0.332 KYRG-11 (RSP11051)
  19. 0.330 USO 31 (RSP10981)
  20. 0.329 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448372
Overlapping SNPs:
126
Concordance:
123

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495218
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
1713b37853bc7a42e09b42583d90c24ce44df165d3907d9d7794594862036507
Stamping Certificate
Download PDF (844.5 KB)
SHASUM Hash
32f56016be143af5586e09261e07daccbde1437725b31c412e04b0a56f7bf0f5
QR code for RSP11032

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