Skunk#18

RSP 11038

Grower: The Nature Farm

General Information

Accession Date
November 19, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.62%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0582
male female RSP11038

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.005 Skunk 18 (RSP11030)
  2. 0.212 RKM-2018-023 (RSP11115)
  3. 0.231 Golden Goat 2 (RSP10991)
  4. 0.235 Gold Cracker (RSP11041)
  5. 0.242 Square Wave (RSP11344)
  6. 0.243 Durban Poison 1 (RSP11013)
  7. 0.244 RKM-2018-018 (RSP11110)
  8. 0.245 Super Blue Dream (RSP11011)
  9. 0.247 Glueberry OG (RSP11222)
  10. 0.248 Cheese (RSP10460)
  11. 0.250 Gold Cracker (RSP11048)
  12. 0.252 UP Wendigo (RSP11261)
  13. 0.252 RKM-2018-003 (RSP11094)
  14. 0.253 Jamaican Lions Ancestor (RSP11127)
  15. 0.255 T S A G E (RSP11351)
  16. 0.255 Durban Poison (RSP10998)
  17. 0.256 RKM-2018-033 (RSP11125)
  18. 0.258 RKM-2018-027 (RSP11119)
  19. 0.258 Durban Poison (RSP11014)
  20. 0.259 Alaska USA (RSP11171)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.213 RKM-2018-023 (RSP11115)
  2. 0.234 Golden Goat 2 (RSP10991)
  3. 0.246 RKM-2018-003 (RSP11094)
  4. 0.246 Gold Cracker (RSP11048)
  5. 0.251 RKM-2018-033 (RSP11125)
  6. 0.255 RKM-2018-018 (RSP11110)
  7. 0.260 Durban Poison (RSP11014)
  8. 0.261 RKM-2018-027 (RSP11119)
  9. 0.262 RKM-2018-020 (RSP11112)
  10. 0.262 Blueberry Cheesecake (RSP10680)
  11. 0.265 RKM-2018-028 (RSP11120)
  12. 0.267 Pie Hoe (RSP11073)
  13. 0.270 Cbot-2019-006 (RSP11134)
  14. 0.274 Blueberry Cheesecake (RSP10684)
  15. 0.274 Kimbo Slice (RSP10997)
  16. 0.274 Hermaphrodite ResearchSample2 (RSP11050)
  17. 0.276 RKM-2018-006 (RSP11097)
  18. 0.278 The Gift (RSP10988)
  19. 0.279 Liberty Haze (RSP11000)
  20. 0.280 Blue Dream (RSP11033)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.482 Cherry Blossom (RSP11317)
  2. 0.467 Cherry Blossom (RSP11306)
  3. 0.466 Cherry Blossom (RSP11333)
  4. 0.465 Cherry Blossom (RSP11311)
  5. 0.462 Cherry Blossom (RSP11318)
  6. 0.461 Cherry Blossom (RSP11308)
  7. 0.459 Cherry Blossom (RSP11314)
  8. 0.459 Cherry Blossom (RSP11324)
  9. 0.458 Cherry Blossom (RSP11335)
  10. 0.458 Cherry Blossom (RSP11330)
  11. 0.453 Cherry Blossom (RSP11322)
  12. 0.452 Cherry Blossom (RSP11325)
  13. 0.452 Cherry Blossom (RSP11323)
  14. 0.451 Cherry Blossom (RSP11334)
  15. 0.446 Cherry Blossom (RSP11328)
  16. 0.434 Cherry Blossom (RSP11329)
  17. 0.432 Unknown- Cherry Wine - 001 (RSP11268)
  18. 0.427 Cherry Blossom (RSP11326)
  19. 0.424 Cherry Blossom (RSP11327)
  20. 0.418 Cherry Blossom (RSP11332)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.406 Cbot-2019-005 (RSP11133)
  2. 0.390 Carmagnola (RSP11037)
  3. 0.387 Cherry (RSP11142)
  4. 0.380 Monoica (RSP10241)
  5. 0.379 Feral (RSP10890)
  6. 0.372 Cbot-2019-001 (RSP11129)
  7. 0.366 Cherry (RSP11143)
  8. 0.366 USO 31 (RSP10981)
  9. 0.362 Kyrgyz Gold (RSP11054)
  10. 0.361 Ivory (RSP10668)
  11. 0.360 Tisza (RSP11044)
  12. 0.360 Fedora 17 (RSP10661)
  13. 0.356 Santhica27 (RSP11047)
  14. 0.356 Futura 75 (RSP10664)
  15. 0.351 Blueberry Cheesecake (RSP10672)
  16. 0.350 Lovrin (RSP10658)
  17. 0.350 Carmagnola (RSP10979)
  18. 0.347 KYRG-11 (RSP11051)
  19. 0.345 Jiangji (RSP10653)
  20. 0.333 Tisza (RSP10659)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448331
Overlapping SNPs:
110
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495279
Overlapping SNPs:
17
Concordance:
15

Blockchain Registration Information

Transaction ID
a60cf28d7a7407677c13b50245f977c48a73be7e54d4e087194b337e651d8b85
Stamping Certificate
Download PDF (843.2 KB)
SHASUM Hash
9aea893ec5430702f384b43cfff424c4600c8263f99d697b0062d4152b462cf3
QR code for RSP11038

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