Gold Cracker

RSP 11041

Grower: Jeff's Detail

General Information

Accession Date
December 18, 2017
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.82%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0492
male female RSP11041

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.015 Gold Cracker (RSP11048)
  2. 0.146 BLACK JACK (RSP11346)
  3. 0.153 Black Jack (RSP10603)
  4. 0.157 RKM-2018-016 (RSP11108)
  5. 0.158 RKM-2018-025 (RSP11117)
  6. 0.171 Durban Poison #1 (RSP11013)
  7. 0.172 Serious Happiness (RSP10763)
  8. 0.177 Domnesia (RSP11184)
  9. 0.178 Durban Poison #1 (RSP10996)
  10. 0.179 Blue Dream (RSP11004)
  11. 0.182 Trump x Trump (RSP11466)
  12. 0.182 Durban Poison (RSP11014)
  13. 0.182 OR 05MAY2017 (RSP10940)
  14. 0.184 RKM-2018-027 (RSP11119)
  15. 0.184 Liberty Haze (RSP11000)
  16. 0.185 Erez 05MAY2017 (RSP10942)
  17. 0.186 Electra (RSP11366)
  18. 0.188 Durban Poison (RSP10998)
  19. 0.188 Rest (RSP11377)
  20. 0.188 White Chronic (RSP11220)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.012 Gold Cracker (RSP11048)
  2. 0.172 Liberty Haze (RSP11000)
  3. 0.179 Durban Poison (RSP11014)
  4. 0.187 RKM-2018-027 (RSP11119)
  5. 0.199 Blueberry Cheesecake (RSP10684)
  6. 0.201 UP Sunrise (RSP10989)
  7. 0.221 RKM-2018-020 (RSP11112)
  8. 0.222 Italian Kiss (RSP11034)
  9. 0.223 Blue Dream (RSP11033)
  10. 0.226 RKM-2018-003 (RSP11094)
  11. 0.234 RKM-2018-009 (RSP11100)
  12. 0.238 Golden Goat 2 (RSP10991)
  13. 0.244 Recon (RSP10755)
  14. 0.244 RKM-2018-031 (RSP11123)
  15. 0.245 Cbot-2019-006 (RSP11134)
  16. 0.246 RKM-2018-006 (RSP11097)
  17. 0.247 CST (RSP11002)
  18. 0.249 RKM-2018-023 (RSP11115)
  19. 0.253 RKM-2018-032 (RSP11124)
  20. 0.253 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.453 Cherry Blossom (RSP11323)
  2. 0.437 Cherry Blossom (RSP11311)
  3. 0.431 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.429 Cherry Blossom (RSP11328)
  5. 0.429 Cherry Blossom (RSP11318)
  6. 0.413 Cherry Blossom (RSP11334)
  7. 0.410 Cherry Blossom (RSP11314)
  8. 0.409 Cherry Blossom (RSP11312)
  9. 0.409 Feral (RSP11205)
  10. 0.406 CS (RSP11208)
  11. 0.404 Cherry Blossom (RSP11298)
  12. 0.403 Cherry Blossom (RSP11309)
  13. 0.401 Cherry Blossom (RSP11317)
  14. 0.397 Unknown--Cherry Wine---002- (RSP11269)
  15. 0.395 Unknown--Cherry Wine---003- (RSP11270)
  16. 0.393 Cherry Blossom (RSP11274)
  17. 0.392 Feral (RSP10890)
  18. 0.388 XBL1 (SRR14708207)
  19. 0.388 80E (RSP11213)
  20. 0.387 Tiger Tail -30- (RSP11484)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.385 Feral (RSP10890)
  2. 0.374 Carmagnola (RSP11037)
  3. 0.372 Santhica27 (RSP11047)
  4. 0.370 Ivory (RSP10668)
  5. 0.363 Monoica (RSP10241)
  6. 0.362 Futura 75 (RSP10664)
  7. 0.352 Cbot-2019-005 (RSP11133)
  8. 0.350 Tisza (RSP11044)
  9. 0.348 Lovrin (RSP10658)
  10. 0.345 Carmagnola (RSP10979)
  11. 0.344 Kyrgyz Gold (RSP11054)
  12. 0.342 Fedora 17 (RSP10661)
  13. 0.337 RKM-2018-026 (RSP11118)
  14. 0.334 JL yellow (RSP11075)
  15. 0.332 Jiangji (RSP10653)
  16. 0.332 USO 31 (RSP10981)
  17. 0.330 KYRG-11 (RSP11051)
  18. 0.329 Cbot-2019-001 (RSP11129)
  19. 0.325 Tygra (RSP10667)
  20. 0.324 Cherry (RSP11142)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346625
Overlapping SNPs:
110
Concordance:
76

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495323
Overlapping SNPs:
12
Concordance:
12

Blockchain Registration Information

Transaction ID
8c5d2ff1016e9db071c1a2f1285565e3b75bac485868be35b51529865c40f855
Stamping Certificate
Download PDF (861.2 KB)
SHASUM Hash
2b46d1649cd2f505d59ab56d031d339591d6fd305120336739efbd5288c4e679
QR code for RSP11041

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