Hermaphrodite_Research_Sample1

RSP 11042

Grower: Iron Laboratories

General Information

Accession Date
December 18, 2017
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.78%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0450
male female RSP11042

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.002 Bordello (RSP11228)
  2. 0.004 Hermaphrodite Research Sample1 (RSP11049)
  3. 0.145 RKM-2018-018 (RSP11110)
  4. 0.167 Blue Dream (RSP11009)
  5. 0.175 Blue Dream (RSP11017)
  6. 0.178 Blue Dream (RSP11010)
  7. 0.180 Blue Dream (RSP11004)
  8. 0.186 Sour D (RSP11343)
  9. 0.187 Blue Dream (RSP11008)
  10. 0.187 Blue Dream (RSP11007)
  11. 0.188 Serious Happiness (RSP10763)
  12. 0.188 TI (RSP11149)
  13. 0.189 Blue Dream (RSP11006)
  14. 0.196 Blue Dream (RSP11012)
  15. 0.199 OR 05MAY2017 (RSP10940)
  16. 0.200 Rest (RSP11377)
  17. 0.201 JL Cross 13 (RSP11514)
  18. 0.202 East Coast Sour Diesel (RSP10243)
  19. 0.205 Domnesia (RSP11184)
  20. 0.206 Super Blue Dream (RSP11011)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.005 Hermaphrodite Research Sample1 (RSP11049)
  2. 0.140 RKM-2018-018 (RSP11110)
  3. 0.219 Sour Raspberry (RSP10551)
  4. 0.219 Blue Dream (RSP11033)
  5. 0.224 Italian Kiss (RSP11034)
  6. 0.227 RKM-2018-028 (RSP11120)
  7. 0.228 Blueberry Cheesecake (RSP10684)
  8. 0.231 RKM-2018-009 (RSP11100)
  9. 0.234 RKM-2018-032 (RSP11124)
  10. 0.236 RKM-2018-002 (RSP11093)
  11. 0.239 Golden Goat 2 (RSP10991)
  12. 0.242 UP Sunrise (RSP10989)
  13. 0.250 RKM-2018-006 (RSP11097)
  14. 0.254 Gold Cracker (RSP11048)
  15. 0.255 RKM-2018-003 (RSP11094)
  16. 0.259 Durban Poison (RSP11014)
  17. 0.262 RKM-2018-033 (RSP11125)
  18. 0.266 RKM-2018-027 (RSP11119)
  19. 0.273 Liberty Haze (RSP11000)
  20. 0.275 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.490 Cherry Blossom (RSP11311)
  2. 0.481 Cherry Blossom (RSP11328)
  3. 0.455 Cherry Blossom (RSP11314)
  4. 0.451 Cherry Blossom (RSP11334)
  5. 0.449 Cherry Blossom (RSP11309)
  6. 0.446 Unknown--Cherry Wine---001- (RSP11268)
  7. 0.442 Unknown--Cherry Wine---003- (RSP11270)
  8. 0.442 Cherry Blossom (RSP11298)
  9. 0.440 Cherry Blossom (RSP11312)
  10. 0.438 Cherry Blossom (RSP11300)
  11. 0.437 Tiger Tail -30- (RSP11484)
  12. 0.436 Unknown--Cherry Wine---002- (RSP11269)
  13. 0.432 80E (RSP11213)
  14. 0.425 Cherry Blossom (RSP11333)
  15. 0.424 Cherry Blossom (RSP11317)
  16. 0.423 Northern Skunk (RSP11456)
  17. 0.421 JL 3rd Gen Father (RSP11196)
  18. 0.420 80E (RSP11211)
  19. 0.417 Cherry Blossom (RSP11335)
  20. 0.416 Cherry Blossom (RSP11308)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.415 Cbot-2019-005 (RSP11133)
  2. 0.406 Cherry (RSP11142)
  3. 0.385 Santhica27 (RSP11047)
  4. 0.378 Feral (RSP10890)
  5. 0.377 Monoica (RSP10241)
  6. 0.369 Futura 75 (RSP10664)
  7. 0.367 Kush Hemp E1 (RSP11128)
  8. 0.364 Fedora 17 (RSP10661)
  9. 0.357 Carmagnola (RSP11037)
  10. 0.356 Kyrgyz Gold (RSP11054)
  11. 0.356 USO 31 (RSP10981)
  12. 0.355 Cherry (RSP11143)
  13. 0.355 Lovrin (RSP10658)
  14. 0.354 Carmagnola (RSP10979)
  15. 0.353 KYRG-11 (RSP11051)
  16. 0.347 Tisza (RSP11044)
  17. 0.347 RKM-2018-019 (RSP11111)
  18. 0.347 Ivory (RSP10668)
  19. 0.345 RKM-2018-026 (RSP11118)
  20. 0.345 JL yellow (RSP11075)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347003
Overlapping SNPs:
120
Concordance:
114

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
1c0fdcbaa449bd22411173831aecbab6f3567bfed97b4fb63159e122be5b31eb
Stamping Certificate
Download PDF (852.0 KB)
SHASUM Hash
b91e36b3de9cd286c5dc7c453073bc54ee36cda66e1d3197778443ee99c69ca6
QR code for RSP11042

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