Tisza
RSP 11045
Grower: CSU
General Information
- Sample Name
- Tisza-1
- Accession Date
- January 7, 2018
- Reported Plant Sex
- Male
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a |
c.-22_2delTA |
p.Met1del | start lost & conservative inframe deletion | high | contig700 | 1945631 |
CATATTATTATT |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-4b | c.526T>C | p.Trp176Arg | missense variant | moderate | contig700 | 2721147 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.160A>C | p.Thr54Pro | missense variant | moderate | contig121 | 2835867 | A/C | |
aPT1 | c.670T>A | p.Ser224Thr | missense variant | moderate | contig121 | 2840278 | T/A |
|
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.005 Tisza (RSP11044)
- 0.197 Carmagnola (RSP10978)
- 0.203 Tiborszallasie (RSP11210)
- 0.206 Carmagnola (RSP10979)
- 0.207 Carmagnola (RSP10976)
- 0.207 Tisza (RSP10659)
- 0.208 Carmagnola (RSP10982)
- 0.208 Santhica 27 (RSP10665)
- 0.212 Tygra (RSP10667)
- 0.212 KYRG-151 (RSP11052)
- 0.213 Fedora 17 (RSP10661)
- 0.213 Futura 75 (RSP10664)
- 0.215 Carmagnola (RSP11039)
- 0.217 Diana (RSP10235)
- 0.217 Carmagnola (RSP11037)
- 0.218 Carmagnola (RSP11202)
- 0.218 Carmagnola USO 31 (RSP11204)
- 0.220 Feral (RSP10891)
- 0.223 KYRG-21 (RSP11053)
- 0.226 Lovrin (RSP10658)
Nearest genetic relatives (Base Tree)
- 0.004 Tisza (RSP11044)
- 0.202 Tisza (RSP10659)
- 0.210 Carmagnola (RSP10979)
- 0.211 Futura 75 (RSP10664)
- 0.211 Fedora 17 (RSP10661)
- 0.216 Tygra (RSP10667)
- 0.221 Carmagnola (RSP11037)
- 0.227 Lovrin (RSP10658)
- 0.228 Feral (RSP10890)
- 0.231 Monoica (RSP10241)
- 0.233 Santhica27 (RSP11047)
- 0.234 USO 31 (RSP10981)
- 0.238 KYRG-11 (RSP11051)
- 0.246 Jiangji (RSP10653)
- 0.247 Ivory (RSP10668)
- 0.256 Kyrgyz Gold (RSP11054)
- 0.277 Recon (RSP10755)
- 0.282 RKM-2018-029 (RSP11121)
- 0.287 Kimbo Slice (RSP10997)
- 0.290 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.462 Cherry Blossom (RSP11323)
- 0.447 Cherry Blossom (RSP11318)
- 0.427 Cherry Blossom (RSP11311)
- 0.425 Cherry Blossom (RSP11334)
- 0.422 Unknown- Cherry Wine - 001 (RSP11268)
- 0.422 Cherry Blossom (RSP11331)
- 0.421 Cherry Blossom (RSP11312)
- 0.421 Cherry Blossom (RSP11328)
- 0.415 Cherry Blossom (RSP11325)
- 0.414 Cherry Blossom (RSP11298)
- 0.411 Cherry Blossom (RSP11301)
- 0.411 Cherry Blossom (RSP11308)
- 0.408 Cherry Blossom (RSP11335)
- 0.407 Cherry Blossom (RSP11300)
- 0.407 Cherry Blossom (RSP11299)
- 0.401 Cherry Blossom (RSP11333)
- 0.401 Cherry Blossom (RSP11302)
- 0.397 Cherry Blossom (RSP11324)
- 0.397 Wife (RSP11148)
- 0.397 Cherry Blossom (RSP11306)
Most genetically distant strains (Base Tree)
- 0.389 Cbot-2019-005 (RSP11133)
- 0.366 Cbot-2019-001 (RSP11129)
- 0.359 RKM-2018-006 (RSP11097)
- 0.356 RKM-2018-002 (RSP11093)
- 0.356 Skunk 18 (RSP11038)
- 0.354 Kush Hemp E1 (RSP11128)
- 0.354 RKM-2018-028 (RSP11120)
- 0.354 RKM-2018-003 (RSP11094)
- 0.346 RKM-2018-018 (RSP11110)
- 0.345 RKM-2018-022 (RSP11114)
- 0.343 Cbot-2019-004 (RSP11132)
- 0.343 Cherry (RSP11143)
- 0.338 JL yellow (RSP11075)
- 0.336 RKM-2018-027 (RSP11119)
- 0.335 RKM-2018-032 (RSP11124)
- 0.335 Cherry (RSP11142)
- 0.335 Blueberry Cheesecake (RSP10672)
- 0.334 Sour Raspberry (RSP10551)
- 0.333 Hermaphrodite Research Sample1 (RSP11049)
- 0.332 RKM-2018-023 (RSP11115)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 86
- Concordance:
- 54
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- Transaction ID
-
1b87fc1258bfe7fd
4a1c85de5db5205a 7da1e08e8b6f44d3 15b7ed2bbfbed4ac - Stamping Certificate
- Download PDF (849.1 KB)
- SHASUM Hash
-
5e26a33684f8c0f3
47c660c383eec19d 796a8b7b315caa61 4c445137c74c5052