Gold Cracker

RSP 11048

Grower: Jeff's Detail

General Information

Accession Date
January 7, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.76%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0541
male female RSP11048

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.015 Gold Cracker (RSP11041)
  2. 0.146 BLACK JACK (RSP11346)
  3. 0.148 Durban Poison #1 (RSP11013)
  4. 0.152 Black Jack (RSP10603)
  5. 0.157 RKM-2018-016 (RSP11108)
  6. 0.158 RKM-2018-025 (RSP11117)
  7. 0.159 Durban Poison #1 (RSP10996)
  8. 0.168 Liberty Haze (RSP11000)
  9. 0.169 Durban Poison (RSP11014)
  10. 0.172 Durban Poison (RSP10998)
  11. 0.173 Domnesia (RSP11184)
  12. 0.177 Serious Happiness (RSP10763)
  13. 0.181 RKM-2018-027 (RSP11119)
  14. 0.181 OR 05MAY2017 (RSP10940)
  15. 0.185 Erez 05MAY2017 (RSP10942)
  16. 0.191 Alaska USA (RSP11171)
  17. 0.192 White Chronic (RSP11220)
  18. 0.192 Durban Poison (RSP11226)
  19. 0.193 UnObtanium (RSP11611)
  20. 0.194 Suver Haze (RSP11364)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.158 Liberty Haze (RSP11000)
  2. 0.173 Durban Poison (RSP11014)
  3. 0.188 RKM-2018-027 (RSP11119)
  4. 0.203 UP Sunrise (RSP10989)
  5. 0.205 Blueberry Cheesecake (RSP10684)
  6. 0.224 RKM-2018-020 (RSP11112)
  7. 0.226 Blue Dream (RSP11033)
  8. 0.227 Italian Kiss (RSP11034)
  9. 0.233 Golden Goat 2 (RSP10991)
  10. 0.234 RKM-2018-003 (RSP11094)
  11. 0.240 RKM-2018-031 (RSP11123)
  12. 0.241 RKM-2018-009 (RSP11100)
  13. 0.244 Recon (RSP10755)
  14. 0.244 Cbot-2019-006 (RSP11134)
  15. 0.249 RKM-2018-006 (RSP11097)
  16. 0.251 CST (RSP11002)
  17. 0.252 RKM-2018-023 (RSP11115)
  18. 0.257 Hermaphrodite Research Sample1 (RSP11049)
  19. 0.259 Skunk#18 (RSP11038)
  20. 0.261 RKM-2018-018 (RSP11110)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.452 Cherry Blossom (RSP11323)
  2. 0.443 Cherry Blossom (RSP11311)
  3. 0.426 Feral (RSP11205)
  4. 0.420 Cherry Blossom (RSP11328)
  5. 0.420 Cherry Blossom (RSP11314)
  6. 0.420 Unknown--Cherry Wine---001- (RSP11268)
  7. 0.420 Cherry Blossom (RSP11318)
  8. 0.407 Cherry Blossom (RSP11334)
  9. 0.407 Cherry Blossom (RSP11309)
  10. 0.405 Cherry Blossom (RSP11312)
  11. 0.402 Feral (RSP10891)
  12. 0.402 CS (RSP11208)
  13. 0.399 Feral (RSP11206)
  14. 0.393 Cherry Blossom (RSP11298)
  15. 0.392 Unknown--Cherry Wine---002- (RSP11269)
  16. 0.392 Feral (RSP10890)
  17. 0.392 Cherry Blossom (RSP11317)
  18. 0.392 Cherry Blossom (RSP11274)
  19. 0.391 80E (RSP11213)
  20. 0.389 Feral (RSP10892)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.391 Feral (RSP10890)
  2. 0.374 Carmagnola (RSP11037)
  3. 0.365 Santhica27 (RSP11047)
  4. 0.362 Ivory (RSP10668)
  5. 0.361 Monoica (RSP10241)
  6. 0.361 Futura 75 (RSP10664)
  7. 0.359 Carmagnola (RSP10979)
  8. 0.359 Jiangji (RSP10653)
  9. 0.356 Tisza (RSP11044)
  10. 0.351 Lovrin (RSP10658)
  11. 0.347 RKM-2018-026 (RSP11118)
  12. 0.346 USO 31 (RSP10981)
  13. 0.345 Cbot-2019-005 (RSP11133)
  14. 0.342 Kyrgyz Gold (RSP11054)
  15. 0.342 JL yellow (RSP11075)
  16. 0.338 Fedora 17 (RSP10661)
  17. 0.328 KYRG-11 (RSP11051)
  18. 0.328 Tisza (RSP10659)
  19. 0.328 Cbot-2019-001 (RSP11129)
  20. 0.327 Blueberry Cheesecake (RSP10672)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346865
Overlapping SNPs:
84
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
06cdde3efe1e04e688ca44fdb12464e1e332fcc4d8b61a407e9b9195183a9018
Stamping Certificate
Download PDF (862.0 KB)
SHASUM Hash
8efaa3ed9416538099e83b7810c2a9a7d3a615d2edc3a8fc34798b366a109976
QR code for RSP11048

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