Gold Cracker

RSP 11048

Grower: Jeff's Detail

General Information

Accession Date
January 7, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.76%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0541
male female RSP11048

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.011 Gold Cracker (RSP11041)
  2. 0.138 Black Jack (RSP10603)
  3. 0.141 BLACK JACK (RSP11346)
  4. 0.148 RKM-2018-016 (RSP11108)
  5. 0.152 RKM-2018-025 (RSP11117)
  6. 0.153 Durban Poison 1 (RSP10996)
  7. 0.154 Durban Poison 1 (RSP11013)
  8. 0.159 Durban Poison (RSP11014)
  9. 0.162 Domnesia (RSP11184)
  10. 0.164 Durban Poison (RSP10998)
  11. 0.171 Liberty Haze (RSP11000)
  12. 0.174 UP All Day Jay (RSP11258)
  13. 0.176 Serious Happiness (RSP10763)
  14. 0.177 Erez (RSP10942)
  15. 0.177 OR (RSP10940)
  16. 0.177 RKM-2018-027 (RSP11119)
  17. 0.180 Doug s Varin (RSP11243)
  18. 0.181 Blue Dream (RSP11009)
  19. 0.184 Blueberry Cheesecake (RSP10684)
  20. 0.184 Blue Dream (RSP11004)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.149 Durban Poison (RSP11014)
  2. 0.167 Liberty Haze (RSP11000)
  3. 0.177 RKM-2018-027 (RSP11119)
  4. 0.186 Blueberry Cheesecake (RSP10684)
  5. 0.210 Blue Dream (RSP11033)
  6. 0.211 Golden Goat 2 (RSP10991)
  7. 0.215 RKM-2018-009 (RSP11100)
  8. 0.219 UP Sunrise (RSP10989)
  9. 0.227 RKM-2018-031 (RSP11123)
  10. 0.227 RKM-2018-020 (RSP11112)
  11. 0.229 Italian Kiss (RSP11034)
  12. 0.232 Hermaphrodite ResearchSample2 (RSP11050)
  13. 0.235 RKM-2018-023 (RSP11115)
  14. 0.240 RKM-2018-003 (RSP11094)
  15. 0.240 CST (RSP11002)
  16. 0.243 RKM-2018-006 (RSP11097)
  17. 0.244 Cbot-2019-006 (RSP11134)
  18. 0.245 Recon (RSP10755)
  19. 0.246 RKM-2018-032 (RSP11124)
  20. 0.246 Skunk 18 (RSP11038)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.464 Cherry Blossom (RSP11323)
  2. 0.451 Cherry Blossom (RSP11311)
  3. 0.435 Cherry Blossom (RSP11328)
  4. 0.434 Cherry Blossom (RSP11318)
  5. 0.430 Unknown- Cherry Wine - 001 (RSP11268)
  6. 0.426 Cherry Blossom (RSP11314)
  7. 0.423 Cherry Blossom (RSP11334)
  8. 0.401 Cherry Blossom (RSP11309)
  9. 0.398 Cherry Blossom (RSP11312)
  10. 0.397 Cherry Blossom (RSP11317)
  11. 0.393 Unknown- Cherry Wine - 002 (RSP11269)
  12. 0.391 Cherry Blossom (RSP11274)
  13. 0.387 Cherry Blossom (RSP11298)
  14. 0.386 CS (RSP11208)
  15. 0.384 Feral (RSP11205)
  16. 0.384 Unknown- Cherry Wine - 003 (RSP11270)
  17. 0.381 Cherry Blossom (RSP11306)
  18. 0.380 Cherry Blossom (RSP11333)
  19. 0.380 Cherry Blossom (RSP11308)
  20. 0.377 Cherry Blossom (RSP11335)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.362 Carmagnola (RSP11037)
  2. 0.358 Cbot-2019-005 (RSP11133)
  3. 0.354 Ivory (RSP10668)
  4. 0.351 Santhica27 (RSP11047)
  5. 0.348 Futura 75 (RSP10664)
  6. 0.346 Monoica (RSP10241)
  7. 0.342 Lovrin (RSP10658)
  8. 0.339 Feral (RSP10890)
  9. 0.337 USO 31 (RSP10981)
  10. 0.336 Carmagnola (RSP10979)
  11. 0.333 Jiangji (RSP10653)
  12. 0.333 Kyrgyz Gold (RSP11054)
  13. 0.332 Tisza (RSP10659)
  14. 0.330 KYRG-11 (RSP11051)
  15. 0.330 Tisza (RSP11044)
  16. 0.325 Cherry (RSP11143)
  17. 0.323 Cherry (RSP11142)
  18. 0.319 Fedora 17 (RSP10661)
  19. 0.318 Cbot-2019-001 (RSP11129)
  20. 0.316 Blueberry Cheesecake (RSP10672)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346865
Overlapping SNPs:
84
Concordance:
62

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
06cdde3efe1e04e688ca44fdb12464e1e332fcc4d8b61a407e9b9195183a9018
Stamping Certificate
Download PDF (862.0 KB)
SHASUM Hash
8efaa3ed9416538099e83b7810c2a9a7d3a615d2edc3a8fc34798b366a109976
QR code for RSP11048

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