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Hermaphrodite_Research_Sample1

RSP 11049

Grower: Iron Laboratories

General Information

Accession Date
January 7, 2018
Reported Plant Sex
unknown

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.79%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0445
male female RSP11049

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

clone distance sibling distance more distant
  1. 0.002 Bordello (RSP11228)
  2. 0.004 Hermaphrodite Research Sample1 (RSP11042)
  3. 0.147 RKM-2018-018 (RSP11110)
  4. 0.166 Blue Dream (RSP11010)
  5. 0.181 Blue Dream (RSP11017)
  6. 0.181 Sour D (RSP11343)
  7. 0.185 Super Blue Dream (RSP11011)
  8. 0.187 Serious Happiness (RSP10763)
  9. 0.187 Blue Dream (RSP11009)
  10. 0.188 Blue Dream (RSP11006)
  11. 0.192 Blue Dream (RSP11008)
  12. 0.193 Blue Dream (RSP11004)
  13. 0.195 East Coast Sour Diesel (RSP10243)
  14. 0.196 Blue Dream (RSP11007)
  15. 0.198 TI (RSP11149)
  16. 0.200 Sour Raspberry (RSP10551)
  17. 0.201 Blue Dream (RSP11012)
  18. 0.201 Domnesia (RSP11184)
  19. 0.202 Snoops Dream (RSP11003)
  20. 0.211 Snoops Dream (RSP11031)

Nearest genetic relatives (Base Tree)

clone distance sibling distance more distant
  1. 0.145 RKM-2018-018 (RSP11110)
  2. 0.203 Sour Raspberry (RSP10551)
  3. 0.211 RKM-2018-028 (RSP11120)
  4. 0.212 RKM-2018-002 (RSP11093)
  5. 0.217 RKM-2018-032 (RSP11124)
  6. 0.225 Blue Dream (RSP11033)
  7. 0.226 Italian Kiss (RSP11034)
  8. 0.228 Blueberry Cheesecake (RSP10684)
  9. 0.232 Golden Goat 2 (RSP10991)
  10. 0.238 RKM-2018-009 (RSP11100)
  11. 0.245 RKM-2018-006 (RSP11097)
  12. 0.252 Pie Hoe (RSP11073)
  13. 0.253 RKM-2018-003 (RSP11094)
  14. 0.254 Durban Poison (RSP11014)
  15. 0.255 RKM-2018-027 (RSP11119)
  16. 0.255 Gold Cracker (RSP11048)
  17. 0.258 Liberty Haze (RSP11000)
  18. 0.259 RKM-2018-033 (RSP11125)
  19. 0.263 RKM-2018-029 (RSP11121)
  20. 0.264 RKM-2018-023 (RSP11115)

Most genetically distant strains (All Samples)

clone distance sibling distance more distant
  1. 0.497 Cherry Blossom (RSP11311)
  2. 0.491 Cherry Blossom (RSP11328)
  3. 0.474 Cherry Blossom (RSP11334)
  4. 0.474 Cherry Blossom (RSP11314)
  5. 0.460 Unknown- Cherry Wine - 001 (RSP11268)
  6. 0.454 Cherry Blossom (RSP11333)
  7. 0.452 Cherry Blossom (RSP11309)
  8. 0.447 Cherry Blossom (RSP11300)
  9. 0.446 Unknown- Cherry Wine - 002 (RSP11269)
  10. 0.446 Cherry Blossom (RSP11324)
  11. 0.440 Cherry Blossom (RSP11317)
  12. 0.440 Unknown- Cherry Wine - 003 (RSP11270)
  13. 0.437 Cherry Blossom (RSP11298)
  14. 0.433 Cherry Blossom (RSP11312)
  15. 0.429 Cbot-2019-005 (RSP11133)
  16. 0.427 80E (RSP11213)
  17. 0.426 Cherry Blossom CBG (RSP11303)
  18. 0.425 Cherry Blossom (RSP11323)
  19. 0.423 Cherry Blossom (RSP11308)
  20. 0.422 Cherry Blossom (RSP11335)

Most genetically distant strains (Base Tree)

clone distance sibling distance more distant
  1. 0.438 Cbot-2019-005 (RSP11133)
  2. 0.410 Cherry (RSP11142)
  3. 0.365 Santhica27 (RSP11047)
  4. 0.365 Monoica (RSP10241)
  5. 0.362 Feral (RSP10890)
  6. 0.359 Kush Hemp E1 (RSP11128)
  7. 0.358 Futura 75 (RSP10664)
  8. 0.357 Cherry (RSP11143)
  9. 0.348 Ivory (RSP10668)
  10. 0.347 Lovrin (RSP10658)
  11. 0.347 Blueberry Cheesecake (RSP10672)
  12. 0.345 Carmagnola (RSP11037)
  13. 0.339 USO 31 (RSP10981)
  14. 0.338 Jiangji (RSP10653)
  15. 0.338 Kyrgyz Gold (RSP11054)
  16. 0.338 Fedora 17 (RSP10661)
  17. 0.336 Tisza (RSP11044)
  18. 0.335 Carmagnola (RSP10979)
  19. 0.335 RKM-2018-019 (RSP11111)
  20. 0.328 JL yellow (RSP11075)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347003
Overlapping SNPs:
117
Concordance:
110

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
9c948f694a4754e3d1579e56324a993e42c45505ad943a92a8a24a509dfa5eca
Stamping Certificate
Download PDF (862.5 KB)
SHASUM Hash
c279b7f1ca72f05cdc47f99df7715efae539334ae12d575bb74de8ad3221e19b
QR code for RSP11049

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