Hermaphrodite_Research_Sample1
RSP 11049
Grower: Iron Laboratories
General Information
- Accession Date
- January 7, 2018
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.002 Bordello (RSP11228)
- 0.004 Hermaphrodite Research Sample1 (RSP11042)
- 0.147 RKM-2018-018 (RSP11110)
- 0.166 Blue Dream (RSP11010)
- 0.181 Blue Dream (RSP11017)
- 0.181 Sour D (RSP11343)
- 0.185 Super Blue Dream (RSP11011)
- 0.187 Serious Happiness (RSP10763)
- 0.187 Blue Dream (RSP11009)
- 0.188 Blue Dream (RSP11006)
- 0.192 Blue Dream (RSP11008)
- 0.193 Blue Dream (RSP11004)
- 0.195 East Coast Sour Diesel (RSP10243)
- 0.196 Blue Dream (RSP11007)
- 0.198 TI (RSP11149)
- 0.200 Sour Raspberry (RSP10551)
- 0.201 Blue Dream (RSP11012)
- 0.201 Domnesia (RSP11184)
- 0.202 Snoops Dream (RSP11003)
- 0.211 Snoops Dream (RSP11031)
Nearest genetic relatives (Base Tree)
- 0.145 RKM-2018-018 (RSP11110)
- 0.203 Sour Raspberry (RSP10551)
- 0.211 RKM-2018-028 (RSP11120)
- 0.212 RKM-2018-002 (RSP11093)
- 0.217 RKM-2018-032 (RSP11124)
- 0.225 Blue Dream (RSP11033)
- 0.226 Italian Kiss (RSP11034)
- 0.228 Blueberry Cheesecake (RSP10684)
- 0.232 Golden Goat 2 (RSP10991)
- 0.238 RKM-2018-009 (RSP11100)
- 0.245 RKM-2018-006 (RSP11097)
- 0.252 Pie Hoe (RSP11073)
- 0.253 RKM-2018-003 (RSP11094)
- 0.254 Durban Poison (RSP11014)
- 0.255 RKM-2018-027 (RSP11119)
- 0.255 Gold Cracker (RSP11048)
- 0.258 Liberty Haze (RSP11000)
- 0.259 RKM-2018-033 (RSP11125)
- 0.263 RKM-2018-029 (RSP11121)
- 0.264 RKM-2018-023 (RSP11115)
Most genetically distant strains (All Samples)
- 0.497 Cherry Blossom (RSP11311)
- 0.491 Cherry Blossom (RSP11328)
- 0.474 Cherry Blossom (RSP11334)
- 0.474 Cherry Blossom (RSP11314)
- 0.460 Unknown- Cherry Wine - 001 (RSP11268)
- 0.454 Cherry Blossom (RSP11333)
- 0.452 Cherry Blossom (RSP11309)
- 0.447 Cherry Blossom (RSP11300)
- 0.446 Unknown- Cherry Wine - 002 (RSP11269)
- 0.446 Cherry Blossom (RSP11324)
- 0.440 Cherry Blossom (RSP11317)
- 0.440 Unknown- Cherry Wine - 003 (RSP11270)
- 0.437 Cherry Blossom (RSP11298)
- 0.433 Cherry Blossom (RSP11312)
- 0.429 Cbot-2019-005 (RSP11133)
- 0.427 80E (RSP11213)
- 0.426 Cherry Blossom CBG (RSP11303)
- 0.425 Cherry Blossom (RSP11323)
- 0.423 Cherry Blossom (RSP11308)
- 0.422 Cherry Blossom (RSP11335)
Most genetically distant strains (Base Tree)
- 0.438 Cbot-2019-005 (RSP11133)
- 0.410 Cherry (RSP11142)
- 0.365 Santhica27 (RSP11047)
- 0.365 Monoica (RSP10241)
- 0.362 Feral (RSP10890)
- 0.359 Kush Hemp E1 (RSP11128)
- 0.358 Futura 75 (RSP10664)
- 0.357 Cherry (RSP11143)
- 0.348 Ivory (RSP10668)
- 0.347 Lovrin (RSP10658)
- 0.347 Blueberry Cheesecake (RSP10672)
- 0.345 Carmagnola (RSP11037)
- 0.339 USO 31 (RSP10981)
- 0.338 Jiangji (RSP10653)
- 0.338 Kyrgyz Gold (RSP11054)
- 0.338 Fedora 17 (RSP10661)
- 0.336 Tisza (RSP11044)
- 0.335 Carmagnola (RSP10979)
- 0.335 RKM-2018-019 (RSP11111)
- 0.328 JL yellow (RSP11075)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 117
- Concordance:
- 110
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
9c948f694a4754e3
d1579e56324a993e 42c45505ad943a92 a8a24a509dfa5eca - Stamping Certificate
- Download PDF (862.5 KB)
- SHASUM Hash
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c279b7f1ca72f05c
dc47f99df7715efa e539334ae12d575b b74de8ad3221e19b