Hermaphrodite_ResearchSample2

RSP 11050

Grower: Iron Laboratories

General Information

Accession Date
January 7, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.84%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0558
male female RSP11050

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

No variants to report

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.005 Hermaphrodite ResearchSample2 (RSP11043)
  2. 0.118 Sunday Driver (RSP11071)
  3. 0.155 Gorilla Cookies (RSP11231)
  4. 0.190 Pie Hoe (RSP11073)
  5. 0.195 Power Plant (RSP11223)
  6. 0.196 Garlic (RSP11341)
  7. 0.197 Pure Power Plant (RSP11265)
  8. 0.198 SFVxTK (RSP11072)
  9. 0.203 RKM-2018-026 (RSP11118)
  10. 0.204 Grape Stomper (RSP11180)
  11. 0.205 Blueberry Cheesecake (RSP10680)
  12. 0.206 Skywalker OG (RSP10837)
  13. 0.208 MENDO BREATH (RSP11242)
  14. 0.208 RKM-2018-032 (RSP11124)
  15. 0.210 RKM-2018-017 (RSP11109)
  16. 0.212 SHERBERT (RSP11355)
  17. 0.212 RKM-2018-021 (RSP11113)
  18. 0.212 Star Dawg (RSP11352)
  19. 0.214 Dominion Skunk (RSP11354)
  20. 0.214 Blueberry Cheesecake (RSP10684)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.193 Pie Hoe (RSP11073)
  2. 0.202 RKM-2018-032 (RSP11124)
  3. 0.205 Blueberry Cheesecake (RSP10680)
  4. 0.207 Blueberry Cheesecake (RSP10684)
  5. 0.207 Skywalker OG (RSP10837)
  6. 0.207 RKM-2018-026 (RSP11118)
  7. 0.219 RKM-2018-034 (RSP11126)
  8. 0.229 RKM-2018-009 (RSP11100)
  9. 0.230 The Gift (RSP10988)
  10. 0.232 Gold Cracker (RSP11048)
  11. 0.236 Durban Poison (RSP11014)
  12. 0.253 RKM-2018-002 (RSP11093)
  13. 0.255 Sour Raspberry (RSP10551)
  14. 0.256 RKM-2018-020 (RSP11112)
  15. 0.256 Recon (RSP10755)
  16. 0.261 RKM-2018-033 (RSP11125)
  17. 0.262 Cbot-2019-006 (RSP11134)
  18. 0.265 RKM-2018-029 (RSP11121)
  19. 0.266 Italian Kiss (RSP11034)
  20. 0.269 Hermaphrodite Research Sample1 (RSP11049)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.480 Cherry Blossom (RSP11318)
  2. 0.446 Cherry Blossom (RSP11311)
  3. 0.446 Cherry Blossom (RSP11328)
  4. 0.440 Cherry Blossom (RSP11323)
  5. 0.427 Unknown- Cherry Wine - 001 (RSP11268)
  6. 0.427 Cherry Blossom (RSP11301)
  7. 0.417 Cherry Blossom (RSP11325)
  8. 0.409 Wife (RSP11148)
  9. 0.405 Cherry Blossom (RSP11312)
  10. 0.404 Cherry Blossom (RSP11306)
  11. 0.402 Cherry Blossom (RSP11334)
  12. 0.399 Cherry Blossom (RSP11310)
  13. 0.399 Cherry Blossom (RSP11315)
  14. 0.397 Unknown- Cherry Wine - 002 (RSP11269)
  15. 0.396 Cherry Blossom (RSP11308)
  16. 0.396 Cherry Blossom (RSP11317)
  17. 0.394 Cherry Blossom (RSP11302)
  18. 0.394 Unknown- Cherry Wine - 003 (RSP11270)
  19. 0.394 Cherry Blossom (RSP11309)
  20. 0.394 Cherry Blossom (RSP11300)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.357 Cherry (RSP11143)
  2. 0.355 Cbot-2019-001 (RSP11129)
  3. 0.349 Cbot-2019-005 (RSP11133)
  4. 0.345 Carmagnola (RSP11037)
  5. 0.334 Cherry (RSP11142)
  6. 0.333 Futura 75 (RSP10664)
  7. 0.333 Santhica27 (RSP11047)
  8. 0.327 Blueberry Cheesecake (RSP10672)
  9. 0.327 Feral (RSP10890)
  10. 0.326 Lovrin (RSP10658)
  11. 0.326 Carmagnola (RSP10979)
  12. 0.323 USO 31 (RSP10981)
  13. 0.318 Ivory (RSP10668)
  14. 0.312 JL yellow (RSP11075)
  15. 0.311 RKM-2018-018 (RSP11110)
  16. 0.308 Fedora 17 (RSP10661)
  17. 0.305 Kyrgyz Gold (RSP11054)
  18. 0.305 Tisza (RSP10659)
  19. 0.304 Tisza (RSP11044)
  20. 0.302 Monoica (RSP10241)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347203
Overlapping SNPs:
71
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495192
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
f91673135af4254c0fc32c8e8e3c4546a545d2b8702bf772cd0bd7d594ee1e8f
Stamping Certificate
Download PDF (847.6 KB)
SHASUM Hash
521e24aa4946f78d4c9553bc2573a3a48e13e7e6595ff44d5be63acc9c8839b5
QR code for RSP11050

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