Hermaphrodite_ResearchSample2

RSP 11050

Grower: Iron Laboratories

General Information

Accession Date
January 7, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.84%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0558
male female RSP11050

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

No variants to report

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.006 Hermaphrodite ResearchSample2 (RSP11043)
  2. 0.117 Sunday Driver (RSP11071)
  3. 0.157 Gorilla Cookies (RSP11231)
  4. 0.171 Wedding Pie (RSP11745)
  5. 0.196 Center Mark (RSP11629)
  6. 0.204 Rest (RSP11377)
  7. 0.206 GMO x Poison Momosa (RSP12500)
  8. 0.208 Pie Hoe (RSP11073)
  9. 0.209 Doug s Varin (RSP11243)
  10. 0.212 Grape Stomper (RSP11180)
  11. 0.213 SHERBERT (RSP11355)
  12. 0.213 TropCookies (RSP12097)
  13. 0.214 Pure Power Plant (RSP11265)
  14. 0.214 NSPM1 (RSP11362)
  15. 0.216 Peanut Butter Breath (RSP11640)
  16. 0.217 MENDO BREATH (RSP11242)
  17. 0.217 Power Plant (RSP11223)
  18. 0.218 Blueberry Cheesecake (RSP10680)
  19. 0.219 Domnesia (RSP11184)
  20. 0.220 Garlic (RSP11341)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.219 Pie Hoe (RSP11073)
  2. 0.222 Blueberry Cheesecake (RSP10680)
  3. 0.223 RKM-2018-009 (RSP11100)
  4. 0.224 RKM-2018-032 (RSP11124)
  5. 0.225 Durban Poison (RSP11014)
  6. 0.229 Blueberry Cheesecake (RSP10684)
  7. 0.238 RKM-2018-034 (RSP11126)
  8. 0.246 RKM-2018-026 (RSP11118)
  9. 0.248 Skywalker OG (RSP10837)
  10. 0.258 RKM-2018-020 (RSP11112)
  11. 0.259 Recon (RSP10755)
  12. 0.262 Liberty Haze (RSP11000)
  13. 0.262 Gold Cracker (RSP11048)
  14. 0.262 RKM-2018-033 (RSP11125)
  15. 0.263 Sour Raspberry (RSP10551)
  16. 0.272 The Gift (RSP10988)
  17. 0.273 Cbot-2019-006 (RSP11134)
  18. 0.276 UP Sunrise (RSP10989)
  19. 0.278 Golden Goat 2 (RSP10991)
  20. 0.279 RKM-2018-002 (RSP11093)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.447 Cherry Blossom (RSP11318)
  2. 0.440 Cherry Blossom (RSP11328)
  3. 0.437 Cherry Blossom (RSP11311)
  4. 0.412 Cherry Blossom (RSP11323)
  5. 0.406 Cherry Blossom (RSP11312)
  6. 0.400 Cherry Blossom (RSP11301)
  7. 0.400 Unknown--Cherry Wine---001- (RSP11268)
  8. 0.396 80E (RSP11213)
  9. 0.393 Cherry Blossom (RSP11300)
  10. 0.392 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  11. 0.389 Cherry Blossom (RSP11309)
  12. 0.388 Cherry Blossom (RSP11317)
  13. 0.387 Cherry Blossom (RSP11325)
  14. 0.386 Cherry Blossom (RSP11306)
  15. 0.385 Wife (RSP11148)
  16. 0.384 Feral (RSP11206)
  17. 0.383 Cherry Blossom (RSP11331)
  18. 0.381 Avidekel 05MAY2017 (RSP10938)
  19. 0.381 Cherry Blossom (RSP11330)
  20. 0.378 Cherry Blossom (RSP11298)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.370 Cbot-2019-001 (RSP11129)
  2. 0.362 Cherry (RSP11143)
  3. 0.361 Carmagnola (RSP11037)
  4. 0.356 JL yellow (RSP11075)
  5. 0.349 Cbot-2019-005 (RSP11133)
  6. 0.337 Feral (RSP10890)
  7. 0.335 Blueberry Cheesecake (RSP10672)
  8. 0.333 RKM-2018-018 (RSP11110)
  9. 0.331 Cherry (RSP11142)
  10. 0.329 Carmagnola (RSP10979)
  11. 0.328 Lovrin (RSP10658)
  12. 0.322 Santhica27 (RSP11047)
  13. 0.321 USO 31 (RSP10981)
  14. 0.321 Monoica (RSP10241)
  15. 0.318 Black Beauty (RSP11035)
  16. 0.317 Futura 75 (RSP10664)
  17. 0.317 Fedora 17 (RSP10661)
  18. 0.316 Tisza (RSP11044)
  19. 0.313 RKM-2018-019 (RSP11111)
  20. 0.312 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347203
Overlapping SNPs:
71
Concordance:
47

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495192
Overlapping SNPs:
5
Concordance:
5

Blockchain Registration Information

Transaction ID
f91673135af4254c0fc32c8e8e3c4546a545d2b8702bf772cd0bd7d594ee1e8f
Stamping Certificate
Download PDF (847.6 KB)
SHASUM Hash
521e24aa4946f78d4c9553bc2573a3a48e13e7e6595ff44d5be63acc9c8839b5
QR code for RSP11050

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