KYRG-11

RSP 11051

Grower: Landrace kyrgyzstan

General Information

Sample Name
Kxrgyz-L3
Accession Date
February 5, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.09%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0631
male female RSP11051

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT4

UniProt

c.626A>G p.Asn209Ser missense variant moderate contig121 2830904

IGV: Start, Jump

A/G
NGS:
0.035
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.210 Kyrgyz Gold (RSP11054)
  2. 0.211 Santhica27 (RSP10056)
  3. 0.213 KYRG-21 (RSP11053)
  4. 0.214 KYRG-151 (RSP11052)
  5. 0.217 Futura 75 (RSP10664)
  6. 0.227 Tisza (RSP11045)
  7. 0.227 Tisza (RSP11044)
  8. 0.227 Tygra (RSP10667)
  9. 0.228 USO 31 (RSP10981)
  10. 0.228 Santhica 27 (RSP10665)
  11. 0.229 Carmagnola (RSP10982)
  12. 0.230 Tisza (RSP10659)
  13. 0.232 USO 31 (RSP10983)
  14. 0.234 Fedora 17 (RSP10661)
  15. 0.237 Monoica (RSP10241)
  16. 0.240 Lovrin (RSP10658)
  17. 0.241 Eletta Campana (RSP11209)
  18. 0.242 Santhica27 (RSP11046)
  19. 0.242 Fedora 17 (RSP11203)
  20. 0.243 Carmagnola (RSP11037)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.217 Kyrgyz Gold (RSP11054)
  2. 0.229 Tisza (RSP10659)
  3. 0.230 USO 31 (RSP10981)
  4. 0.232 Futura 75 (RSP10664)
  5. 0.234 Fedora 17 (RSP10661)
  6. 0.235 Tisza (RSP11044)
  7. 0.240 Tygra (RSP10667)
  8. 0.245 Lovrin (RSP10658)
  9. 0.246 Carmagnola (RSP11037)
  10. 0.249 Monoica (RSP10241)
  11. 0.251 Jiangji (RSP10653)
  12. 0.257 Carmagnola (RSP10979)
  13. 0.258 Santhica27 (RSP11047)
  14. 0.263 Feral (RSP10890)
  15. 0.266 Ivory (RSP10668)
  16. 0.272 Liberty Haze (RSP11000)
  17. 0.272 Kimbo Slice (RSP10997)
  18. 0.280 The Gift (RSP10988)
  19. 0.287 RKM-2018-029 (RSP11121)
  20. 0.288 QUEEN JESUS (RSP10105)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 Cherry Blossom (RSP11323)
  2. 0.446 Cherry Blossom (RSP11318)
  3. 0.436 Cherry Blossom (RSP11312)
  4. 0.426 Cherry Blossom (RSP11328)
  5. 0.422 Cherry Blossom (RSP11300)
  6. 0.422 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.420 Cherry Blossom (RSP11301)
  8. 0.419 Cherry Blossom (RSP11331)
  9. 0.416 Wife (RSP11148)
  10. 0.406 Cherry Blossom (RSP11298)
  11. 0.406 Cherry Blossom (RSP11319)
  12. 0.405 Cherry Blossom (RSP11334)
  13. 0.404 Cherry Blossom (RSP11311)
  14. 0.402 Avidekel (RSP10938)
  15. 0.400 Cherry Blossom (RSP11299)
  16. 0.396 Cherry Blossom (RSP11310)
  17. 0.395 Cherry Blossom (RSP11309)
  18. 0.395 Cherry Blossom (RSP11321)
  19. 0.394 Cherry Blossom CBG (RSP11303)
  20. 0.391 Unknown- Cherry Wine - 002 (RSP11269)

Most genetically distant strains (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.362 Cherry (RSP11143)
  2. 0.360 Cbot-2019-005 (RSP11133)
  3. 0.355 RKM-2018-002 (RSP11093)
  4. 0.347 RKM-2018-018 (RSP11110)
  5. 0.347 Skunk 18 (RSP11038)
  6. 0.343 RKM-2018-022 (RSP11114)
  7. 0.342 RKM-2018-023 (RSP11115)
  8. 0.339 JL yellow (RSP11075)
  9. 0.339 Cbot-2019-001 (RSP11129)
  10. 0.337 UP Sunrise (RSP10989)
  11. 0.336 RKM-2018-005 (RSP11096)
  12. 0.336 RKM-2018-009 (RSP11100)
  13. 0.335 RKM-2018-028 (RSP11120)
  14. 0.333 RKM-2018-027 (RSP11119)
  15. 0.333 Cbot-2019-004 (RSP11132)
  16. 0.332 Cherry (RSP11142)
  17. 0.332 RKM-2018-006 (RSP11097)
  18. 0.332 RKM-2018-003 (RSP11094)
  19. 0.330 Gold Cracker (RSP11048)
  20. 0.328 Blue Dream (RSP11033)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448704
Overlapping SNPs:
69
Concordance:
43

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495164
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
8925ec04fd2ae2a49643dfb7df0a859fc90229622e2c6d1f026c87caead6f074
Stamping Certificate
Download PDF (854.0 KB)
SHASUM Hash
592c7de2979ddbcf63eadd52a170f74252c5737fd28154286cd05707eb0be1f8
QR code for RSP11051

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