Danny Noonan

RSP 11070

Grower: Brian McKernan

General Information

Accession Date
May 6, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.65%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0515
male female RSP11070

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.181 TI (RSP11149)
  2. 0.250 T S A G E (RSP11351)
  3. 0.266 RKM-2018-004 (RSP11095)
  4. 0.271 Cbot-2019-002 (RSP11130)
  5. 0.271 RKM-2018-005 (RSP11096)
  6. 0.274 Cbot-2019-004 (RSP11132)
  7. 0.274 Blue Dream (RSP11017)
  8. 0.276 Sour D (RSP11343)
  9. 0.278 Sour Tsunami x Cataract Ku (RSP11183)
  10. 0.278 QUEEN JESUS (RSP10105)
  11. 0.278 Super Blue Dream (RSP11011)
  12. 0.279 Miss X (RSP10999)
  13. 0.286 Pure Power Plant (RSP11265)
  14. 0.286 RKM-2018-026 (RSP11118)
  15. 0.288 JABBA S STASH (RSP11348)
  16. 0.290 Queen Dream (RSP11289)
  17. 0.290 RKM-2018-002 (RSP11093)
  18. 0.290 Queen Dream CBG (RSP11277)
  19. 0.291 Lemon Skunk (RSP11229)
  20. 0.291 Queen Dream CBG (RSP11280)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.272 Cbot-2019-004 (RSP11132)
  2. 0.278 RKM-2018-005 (RSP11096)
  3. 0.281 QUEEN JESUS (RSP10105)
  4. 0.289 RKM-2018-018 (RSP11110)
  5. 0.291 RKM-2018-034 (RSP11126)
  6. 0.293 RKM-2018-026 (RSP11118)
  7. 0.295 RKM-2018-028 (RSP11120)
  8. 0.298 RKM-2018-009 (RSP11100)
  9. 0.298 RKM-2018-020 (RSP11112)
  10. 0.298 Blueberry Cheesecake (RSP10684)
  11. 0.302 Pie Hoe (RSP11073)
  12. 0.305 Hermaphrodite ResearchSample2 (RSP11050)
  13. 0.305 UP Sunrise (RSP10989)
  14. 0.308 RKM-2018-002 (RSP11093)
  15. 0.310 Blue Dream (RSP11033)
  16. 0.311 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.314 Italian Kiss (RSP11034)
  18. 0.316 Sour Raspberry (RSP10551)
  19. 0.317 Blueberry Cheesecake (RSP10680)
  20. 0.318 RKM-2018-019 (RSP11111)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.527 Cherry Blossom (RSP11317)
  2. 0.493 Cherry Blossom (RSP11328)
  3. 0.475 Cherry Blossom (RSP11309)
  4. 0.467 Cherry Blossom (RSP11333)
  5. 0.466 Cherry Blossom (RSP11330)
  6. 0.454 Cherry Blossom (RSP11314)
  7. 0.450 Cherry Blossom (RSP11311)
  8. 0.450 Cherry Blossom (RSP11324)
  9. 0.444 Cherry Blossom (RSP11310)
  10. 0.439 Cherry Blossom (RSP11334)
  11. 0.433 Cherry Blossom (RSP11304)
  12. 0.433 Cherry Blossom (RSP11300)
  13. 0.433 Cherry Blossom (RSP11298)
  14. 0.428 Cherry Blossom (RSP11332)
  15. 0.428 Cherry Blossom (RSP11326)
  16. 0.425 JL 3rd Gen Father (RSP11196)
  17. 0.423 Cherry Blossom (RSP11313)
  18. 0.423 Cherry Blossom (RSP11312)
  19. 0.420 White Chronic (RSP11220)
  20. 0.418 80E (RSP11213)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.419 Cherry (RSP11142)
  2. 0.390 RKM-2018-031 (RSP11123)
  3. 0.386 Feral (RSP10890)
  4. 0.383 Tisza (RSP10659)
  5. 0.382 Lovrin (RSP10658)
  6. 0.381 Santhica27 (RSP11047)
  7. 0.381 Ivory (RSP10668)
  8. 0.380 Futura 75 (RSP10664)
  9. 0.380 Monoica (RSP10241)
  10. 0.377 Tisza (RSP11044)
  11. 0.376 Cherry (RSP11143)
  12. 0.375 Kyrgyz Gold (RSP11054)
  13. 0.369 Carmagnola (RSP11037)
  14. 0.367 Recon (RSP10755)
  15. 0.367 RKM-2018-022 (RSP11114)
  16. 0.364 USO 31 (RSP10981)
  17. 0.364 RKM-2018-027 (RSP11119)
  18. 0.358 Tygra (RSP10667)
  19. 0.357 RKM-2018-029 (RSP11121)
  20. 0.355 Black Beauty (RSP11035)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349127
Overlapping SNPs:
98
Concordance:
95

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495157
Overlapping SNPs:
8
Concordance:
6

Blockchain Registration Information

Transaction ID
d005841e4ff50fd5ffa92ee2b07bb492a7fb902a28ff42060c1143f0757d30b6
Stamping Certificate
Download PDF (835.1 KB)
SHASUM Hash
d02a8006430b7c6be59febc26f5623159f524bc3ddf50972407ddebb3eab33f7
QR code for RSP11070

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