SFVxTK

RSP 11072

Grower: Jungle Boys (Kyle)

General Information

Accession Date
May 14, 2018
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.91%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11072

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.004 Skywalker OG (RSP10837)
  2. 0.005 Red Eye OG (RSP11190)
  3. 0.059 RKM-2018-013 (RSP11104)
  4. 0.075 Rugburn OG (RSP11353)
  5. 0.114 501st OG (RSP11241)
  6. 0.140 RKM-2018-012 (RSP11103)
  7. 0.141 RKM-2018-026 (RSP11118)
  8. 0.144 RKM-2018-034 (RSP11126)
  9. 0.148 Pure Power Plant (RSP11265)
  10. 0.151 Pie Hoe (RSP11073)
  11. 0.157 Casco Kush (RSP11167)
  12. 0.161 Gorilla Cookies (RSP11231)
  13. 0.167 Sunday Driver (RSP11071)
  14. 0.172 Garlic (RSP11341)
  15. 0.172 RKM-2018-008 (RSP11099)
  16. 0.178 The Gift (RSP10988)
  17. 0.183 SHERBERT (RSP11355)
  18. 0.198 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.200 Abacus (RSP11266)
  20. 0.201 RKM-2018-032 (RSP11124)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.004 Skywalker OG (RSP10837)
  2. 0.143 RKM-2018-026 (RSP11118)
  3. 0.147 RKM-2018-034 (RSP11126)
  4. 0.153 Pie Hoe (RSP11073)
  5. 0.172 The Gift (RSP10988)
  6. 0.202 Hermaphrodite ResearchSample2 (RSP11050)
  7. 0.206 RKM-2018-032 (RSP11124)
  8. 0.216 RKM-2018-002 (RSP11093)
  9. 0.243 RKM-2018-033 (RSP11125)
  10. 0.245 Kimbo Slice (RSP10997)
  11. 0.246 RKM-2018-020 (RSP11112)
  12. 0.255 RKM-2018-005 (RSP11096)
  13. 0.257 Liberty Haze (RSP11000)
  14. 0.262 Blueberry Cheesecake (RSP10684)
  15. 0.265 Kush Hemp E1 (RSP11128)
  16. 0.269 Gold Cracker (RSP11048)
  17. 0.270 Blueberry Cheesecake (RSP10680)
  18. 0.271 Hermaphrodite Research Sample1 (RSP11049)
  19. 0.285 RKM-2018-009 (RSP11100)
  20. 0.287 Durban Poison (RSP11014)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.497 Cherry Blossom (RSP11318)
  2. 0.485 Cherry Blossom (RSP11323)
  3. 0.479 Unknown- Cherry Wine - 001 (RSP11268)
  4. 0.467 Unknown- Cherry Wine - 002 (RSP11269)
  5. 0.458 Wife (RSP11148)
  6. 0.453 Unknown- Cherry Wine - 003 (RSP11270)
  7. 0.452 Cherry Blossom (RSP11312)
  8. 0.450 Cherry Blossom (RSP11301)
  9. 0.447 Cherry Blossom (RSP11300)
  10. 0.444 Cherry Blossom (RSP11315)
  11. 0.443 Cherry Blossom (RSP11328)
  12. 0.440 Cherry Blossom (RSP11325)
  13. 0.437 Avidekel (RSP10938)
  14. 0.437 Cherry Blossom (RSP11274)
  15. 0.436 Cherry Blossom (RSP11306)
  16. 0.436 Cherry Blossom (RSP11319)
  17. 0.434 Cherry Blossom (RSP11309)
  18. 0.431 Cherry Blossom (RSP11310)
  19. 0.429 Cherry Blossom (RSP11331)
  20. 0.428 Cherry Blossom (RSP11334)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.395 Cbot-2019-005 (RSP11133)
  2. 0.388 Cherry (RSP11143)
  3. 0.382 Cbot-2019-004 (RSP11132)
  4. 0.378 JL yellow (RSP11075)
  5. 0.374 Cherry (RSP11142)
  6. 0.365 RKM-2018-023 (RSP11115)
  7. 0.360 Black Beauty (RSP11035)
  8. 0.360 RKM-2018-006 (RSP11097)
  9. 0.359 Cbot-2019-001 (RSP11129)
  10. 0.359 UP Sunrise (RSP10989)
  11. 0.356 Italian Kiss (RSP11034)
  12. 0.355 RKM-2018-003 (RSP11094)
  13. 0.353 Blueberry Cheesecake (RSP10672)
  14. 0.351 Futura 75 (RSP10664)
  15. 0.350 RKM-2018-028 (RSP11120)
  16. 0.347 Carmagnola (RSP11037)
  17. 0.347 RKM-2018-027 (RSP11119)
  18. 0.346 RKM-2018-018 (RSP11110)
  19. 0.341 Lovrin (RSP10658)
  20. 0.339 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347029
Overlapping SNPs:
120
Concordance:
120

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495293
Overlapping SNPs:
14
Concordance:
14

Blockchain Registration Information

Transaction ID
0d58f3ff72d7e4c41631d2d052909a30468006a7c96b0c0c639517f7a8976795
Stamping Certificate
Download PDF (849.9 KB)
SHASUM Hash
f8a7bf4ace12ddc341563a3b7002af1559385a7c2421dca5a0486d71197b801d
QR code for RSP11072

Kannapedia uses cookies

By clicking Allow All, you agree to the storing of cookies on your device to enhance site navigation, analyze site usage, and assist in our marketing efforts.

Customize Settings