JL yellow

RSP 11075

Grower: Emerald pharms

General Information

Accession Date
June 12, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0273
male female RSP11075

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.000 JL 3rd Gen Mother (RSP11197)
  2. 0.001 JL 3rd Gen Mother (RSP11214)
  3. 0.138 JL 4th Gen 1 (RSP11193)
  4. 0.150 JL 4th Gen 5 (RSP11199)
  5. 0.152 JL 4th Gen 2 (RSP11194)
  6. 0.153 JL 4th Gen 6 (RSP11200)
  7. 0.169 JL 4th Gen 3 (RSP11195)
  8. 0.169 JL 4th Gen 4 (RSP11198)
  9. 0.193 Jamaican Lions Ancestor (RSP11127)
  10. 0.223 JL 4th Gen 7 (RSP11153)
  11. 0.255 Blue Dream (RSP11342)
  12. 0.269 Italian Kiss (RSP10990)
  13. 0.273 Snoops Dream (RSP11031)
  14. 0.274 RKM-2018-006 (RSP11097)
  15. 0.274 Blue Dream (RSP11032)
  16. 0.277 Italian Kiss (RSP11034)
  17. 0.278 Blue Dream (RSP11005)
  18. 0.279 Blue Dream (RSP11033)
  19. 0.284 CST (RSP11002)
  20. 0.285 Blue Dream (RSP11012)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.270 Blue Dream (RSP11033)
  2. 0.277 CST (RSP11002)
  3. 0.278 Italian Kiss (RSP11034)
  4. 0.281 RKM-2018-006 (RSP11097)
  5. 0.290 Sour Raspberry (RSP10551)
  6. 0.294 RKM-2018-023 (RSP11115)
  7. 0.306 RKM-2018-027 (RSP11119)
  8. 0.312 Hermaphrodite ResearchSample2 (RSP11050)
  9. 0.312 RKM-2018-009 (RSP11100)
  10. 0.314 Gold Cracker (RSP11048)
  11. 0.315 Skunk 18 (RSP11038)
  12. 0.317 QUEEN JESUS (RSP10105)
  13. 0.322 UP Sunrise (RSP10989)
  14. 0.323 Kimbo Slice (RSP10997)
  15. 0.325 Blueberry Cheesecake (RSP10680)
  16. 0.328 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.329 Golden Goat 2 (RSP10991)
  18. 0.329 Jiangji (RSP10653)
  19. 0.330 RKM-2018-031 (RSP11123)
  20. 0.332 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.521 Cherry Blossom (RSP11308)
  2. 0.519 Cherry Blossom (RSP11335)
  3. 0.514 Cherry Blossom (RSP11311)
  4. 0.502 Cherry Blossom (RSP11333)
  5. 0.496 Cherry Blossom (RSP11334)
  6. 0.484 Cherry Blossom (RSP11317)
  7. 0.483 Cherry Blossom (RSP11302)
  8. 0.482 Cherry Blossom (RSP11324)
  9. 0.480 Cherry Blossom (RSP11314)
  10. 0.479 Cherry Blossom (RSP11312)
  11. 0.477 80E (RSP11213)
  12. 0.474 Cherry Blossom (RSP11328)
  13. 0.473 Avidekel (RSP10938)
  14. 0.472 80E (RSP11211)
  15. 0.471 Cherry Blossom (RSP11331)
  16. 0.469 Cherry Blossom (RSP11318)
  17. 0.469 Cherry Blossom (RSP11300)
  18. 0.466 Cherry Blossom (RSP11310)
  19. 0.462 80E (RSP11212)
  20. 0.462 Cherry Blossom (RSP11326)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.451 Cbot-2019-005 (RSP11133)
  2. 0.420 Cherry (RSP11142)
  3. 0.414 Cherry (RSP11143)
  4. 0.396 Kush Hemp E1 (RSP11128)
  5. 0.393 RKM-2018-019 (RSP11111)
  6. 0.388 RKM-2018-002 (RSP11093)
  7. 0.383 Santhica27 (RSP11047)
  8. 0.381 Skywalker OG (RSP10837)
  9. 0.374 Futura 75 (RSP10664)
  10. 0.374 Cbot-2019-004 (RSP11132)
  11. 0.373 Tisza (RSP10659)
  12. 0.367 Monoica (RSP10241)
  13. 0.366 USO 31 (RSP10981)
  14. 0.365 RKM-2018-022 (RSP11114)
  15. 0.364 RKM-2018-028 (RSP11120)
  16. 0.363 Lovrin (RSP10658)
  17. 0.363 Feral (RSP10890)
  18. 0.362 RKM-2018-026 (RSP11118)
  19. 0.360 Kyrgyz Gold (RSP11054)
  20. 0.359 Blueberry Cheesecake (RSP10684)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349056
Overlapping SNPs:
118
Concordance:
70

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495260
Overlapping SNPs:
16
Concordance:
10

Blockchain Registration Information

Transaction ID
5f81e9ad9c605c74d19b071dd930e29be21bc0094f203ee7e0b60035441cd776
Stamping Certificate
Download PDF (843.3 KB)
SHASUM Hash
39eeea216b2081b8e97c0c597ee8a9742c0c79d205adec3d1be63e6a10f94135
QR code for RSP11075

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