RKM-2018-002

RSP 11093

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.77%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0423
male female RSP11093

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.101 Sour D (RSP11343)
  2. 0.120 East Coast Sour Diesel (RSP10243)
  3. 0.126 New York City Deisel (RSP11225)
  4. 0.131 501st OG (RSP11241)
  5. 0.143 Super Sour Diesel (RSP11191)
  6. 0.145 Star Dawg (RSP11352)
  7. 0.151 RKM-2018-012 (RSP11103)
  8. 0.168 Rugburn OG (RSP11353)
  9. 0.175 Chem 91 (RSP11185)
  10. 0.179 Abacus (RSP11266)
  11. 0.181 RKM-2018-004 (RSP11095)
  12. 0.188 RKM-2018-005 (RSP11096)
  13. 0.196 RKM-2018-032 (RSP11124)
  14. 0.198 RKM-2018-017 (RSP11109)
  15. 0.199 RKM-2018-021 (RSP11113)
  16. 0.203 Mothers Milk 5 (RSP11186)
  17. 0.204 Pure Power Plant (RSP11265)
  18. 0.209 SFVxTK (RSP11072)
  19. 0.212 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.213 Skywalker OG (RSP10837)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.190 RKM-2018-005 (RSP11096)
  2. 0.203 RKM-2018-032 (RSP11124)
  3. 0.212 Hermaphrodite Research Sample1 (RSP11049)
  4. 0.218 Skywalker OG (RSP10837)
  5. 0.235 RKM-2018-033 (RSP11125)
  6. 0.245 Pie Hoe (RSP11073)
  7. 0.252 RKM-2018-026 (RSP11118)
  8. 0.253 Hermaphrodite ResearchSample2 (RSP11050)
  9. 0.256 Durban Poison (RSP11014)
  10. 0.257 Blueberry Cheesecake (RSP10684)
  11. 0.268 Gold Cracker (RSP11048)
  12. 0.269 RKM-2018-009 (RSP11100)
  13. 0.271 RKM-2018-034 (RSP11126)
  14. 0.276 Blueberry Cheesecake (RSP10680)
  15. 0.281 Sour Raspberry (RSP10551)
  16. 0.282 Liberty Haze (RSP11000)
  17. 0.283 RKM-2018-018 (RSP11110)
  18. 0.288 The Gift (RSP10988)
  19. 0.291 RKM-2018-020 (RSP11112)
  20. 0.296 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.499 Cherry Blossom (RSP11333)
  2. 0.494 Cherry Blossom (RSP11317)
  3. 0.489 Cherry Blossom (RSP11324)
  4. 0.486 Cherry Blossom (RSP11314)
  5. 0.485 Cherry Blossom (RSP11318)
  6. 0.482 Unknown- Cherry Wine - 001 (RSP11268)
  7. 0.480 Cherry Blossom (RSP11325)
  8. 0.479 Cherry Blossom (RSP11311)
  9. 0.475 Cherry Blossom (RSP11323)
  10. 0.473 Cherry Blossom (RSP11306)
  11. 0.473 Cherry Blossom (RSP11301)
  12. 0.470 Cherry Blossom (RSP11322)
  13. 0.469 Cherry Blossom (RSP11308)
  14. 0.466 Cherry Blossom (RSP11335)
  15. 0.461 Cherry Blossom (RSP11300)
  16. 0.460 Cherry Blossom (RSP11328)
  17. 0.458 Cherry Blossom (RSP11313)
  18. 0.456 Cherry Blossom (RSP11327)
  19. 0.456 Cherry Blossom (RSP11302)
  20. 0.456 Cherry Blossom (RSP11334)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.436 Cbot-2019-005 (RSP11133)
  2. 0.426 Cherry (RSP11142)
  3. 0.388 JL yellow (RSP11075)
  4. 0.388 Futura 75 (RSP10664)
  5. 0.387 Cherry (RSP11143)
  6. 0.386 Ivory (RSP10668)
  7. 0.386 Cbot-2019-001 (RSP11129)
  8. 0.385 USO 31 (RSP10981)
  9. 0.384 Lovrin (RSP10658)
  10. 0.382 Carmagnola (RSP11037)
  11. 0.380 Santhica27 (RSP11047)
  12. 0.376 Carmagnola (RSP10979)
  13. 0.375 Kyrgyz Gold (RSP11054)
  14. 0.374 Monoica (RSP10241)
  15. 0.372 UP Sunrise (RSP10989)
  16. 0.370 Feral (RSP10890)
  17. 0.364 RKM-2018-006 (RSP11097)
  18. 0.363 Fedora 17 (RSP10661)
  19. 0.362 Tisza (RSP10659)
  20. 0.360 Tisza (RSP11044)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349234
Overlapping SNPs:
113
Concordance:
88

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
6
Concordance:
6

Blockchain Registration Information

Transaction ID
5324a79203d07b33f8dd0406f6772b4c171f01d9f35f85d6ab5afb30a194877b
Stamping Certificate
Download PDF (844.9 KB)
SHASUM Hash
b6fe1e5490427984d02360591b88f2c8aed4cf0b44e4f2e5b4efee46000f7ddc
QR code for RSP11093

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