RKM-2018-004

RSP 11096

Grower: R-Kiem Seeds

General Information

Sample Name
RKM-2018-005
Accession Date
September 6, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.87%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0410
male female RSP11096

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.002 RKM-2018-004 (RSP11095)
  2. 0.169 East Coast Sour Diesel (RSP10243)
  3. 0.173 Sour D (RSP11343)
  4. 0.179 RKM-2018-033 (RSP11125)
  5. 0.185 Super Sour Diesel (RSP11191)
  6. 0.188 RKM-2018-002 (RSP11093)
  7. 0.189 New York City Deisel (RSP11225)
  8. 0.203 501st OG (RSP11241)
  9. 0.215 NSPM1 (RSP11362)
  10. 0.221 Rugburn OG (RSP11353)
  11. 0.225 RKM-2018-012 (RSP11103)
  12. 0.229 Chem 91 (RSP11185)
  13. 0.230 Golden Road (RSP11345)
  14. 0.230 Pure Power Plant (RSP11265)
  15. 0.230 RKM-2018-017 (RSP11109)
  16. 0.231 Star Dawg (RSP11352)
  17. 0.231 Garlic (RSP11341)
  18. 0.232 RKM-2018-032 (RSP11124)
  19. 0.233 RKM-2018-021 (RSP11113)
  20. 0.234 Whitey (RSP11363)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.181 RKM-2018-033 (RSP11125)
  2. 0.190 RKM-2018-002 (RSP11093)
  3. 0.233 RKM-2018-032 (RSP11124)
  4. 0.241 Blueberry Cheesecake (RSP10684)
  5. 0.249 RKM-2018-026 (RSP11118)
  6. 0.251 Skywalker OG (RSP10837)
  7. 0.255 Durban Poison (RSP11014)
  8. 0.256 Liberty Haze (RSP11000)
  9. 0.256 RKM-2018-029 (RSP11121)
  10. 0.259 Sour Raspberry (RSP10551)
  11. 0.261 QUEEN JESUS (RSP10105)
  12. 0.263 Blueberry Cheesecake (RSP10680)
  13. 0.265 RKM-2018-034 (RSP11126)
  14. 0.266 RKM-2018-009 (RSP11100)
  15. 0.270 Hermaphrodite ResearchSample2 (RSP11050)
  16. 0.271 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.273 Pie Hoe (RSP11073)
  18. 0.275 Blue Dream (RSP11033)
  19. 0.278 Kimbo Slice (RSP10997)
  20. 0.283 Golden Goat 2 (RSP10991)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.452 Cherry Blossom (RSP11317)
  2. 0.441 Cherry Blossom (RSP11333)
  3. 0.439 Cherry Blossom (RSP11324)
  4. 0.429 Cherry Blossom (RSP11300)
  5. 0.427 Cherry Blossom (RSP11306)
  6. 0.427 80E (RSP11213)
  7. 0.425 Cherry Blossom (RSP11318)
  8. 0.425 Unknown- Cherry Wine - 001 (RSP11268)
  9. 0.423 Cherry Blossom (RSP11311)
  10. 0.420 Cherry Blossom (RSP11301)
  11. 0.419 Cherry Blossom (RSP11314)
  12. 0.416 Cherry Blossom (RSP11325)
  13. 0.412 Avidekel (RSP10938)
  14. 0.411 Cherry Blossom (RSP11328)
  15. 0.410 Cherry Blossom (RSP11322)
  16. 0.406 Wife (RSP11148)
  17. 0.405 80E (RSP11212)
  18. 0.404 Cherry Blossom (RSP11329)
  19. 0.402 Cherry Blossom (RSP11326)
  20. 0.400 80E (RSP11211)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.399 Cbot-2019-005 (RSP11133)
  2. 0.397 Cherry (RSP11142)
  3. 0.372 Kush Hemp E1 (RSP11128)
  4. 0.365 Cherry (RSP11143)
  5. 0.360 Carmagnola (RSP11037)
  6. 0.357 RKM-2018-006 (RSP11097)
  7. 0.351 Monoica (RSP10241)
  8. 0.345 Futura 75 (RSP10664)
  9. 0.343 JL yellow (RSP11075)
  10. 0.342 Carmagnola (RSP10979)
  11. 0.339 Lovrin (RSP10658)
  12. 0.338 Santhica27 (RSP11047)
  13. 0.338 RKM-2018-022 (RSP11114)
  14. 0.337 Feral (RSP10890)
  15. 0.336 KYRG-11 (RSP11051)
  16. 0.335 Fedora 17 (RSP10661)
  17. 0.335 Ivory (RSP10668)
  18. 0.333 Kyrgyz Gold (RSP11054)
  19. 0.333 USO 31 (RSP10981)
  20. 0.333 Recon (RSP10755)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448556
Overlapping SNPs:
119
Concordance:
82

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495204
Overlapping SNPs:
12
Concordance:
12

Blockchain Registration Information

Transaction ID
c46e1aa4f5996c9cfaeba164721564a959a14b8fa150effc4f55e26b0ce335ef
Stamping Certificate
Download PDF (856.9 KB)
SHASUM Hash
56ab644484d1b77e705a31d7daccdeea6481a6e1f7958c2f9620cceda978794f
QR code for RSP11096

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