RKM-2018-004
RSP 11096
Grower: R-Kiem Seeds
General Information
- Sample Name
- RKM-2018-005
- Accession Date
- September 6, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T |
Nearest genetic relatives (All Samples)
- 0.002 RKM-2018-004 (RSP11095)
- 0.169 East Coast Sour Diesel (RSP10243)
- 0.173 Sour D (RSP11343)
- 0.179 RKM-2018-033 (RSP11125)
- 0.185 Super Sour Diesel (RSP11191)
- 0.188 RKM-2018-002 (RSP11093)
- 0.189 New York City Deisel (RSP11225)
- 0.203 501st OG (RSP11241)
- 0.215 NSPM1 (RSP11362)
- 0.221 Rugburn OG (RSP11353)
- 0.225 RKM-2018-012 (RSP11103)
- 0.229 Chem 91 (RSP11185)
- 0.230 Golden Road (RSP11345)
- 0.230 Pure Power Plant (RSP11265)
- 0.230 RKM-2018-017 (RSP11109)
- 0.231 Star Dawg (RSP11352)
- 0.231 Garlic (RSP11341)
- 0.232 RKM-2018-032 (RSP11124)
- 0.233 RKM-2018-021 (RSP11113)
- 0.234 Whitey (RSP11363)
Nearest genetic relatives (Base Tree)
- 0.181 RKM-2018-033 (RSP11125)
- 0.190 RKM-2018-002 (RSP11093)
- 0.233 RKM-2018-032 (RSP11124)
- 0.241 Blueberry Cheesecake (RSP10684)
- 0.249 RKM-2018-026 (RSP11118)
- 0.251 Skywalker OG (RSP10837)
- 0.255 Durban Poison (RSP11014)
- 0.256 Liberty Haze (RSP11000)
- 0.256 RKM-2018-029 (RSP11121)
- 0.259 Sour Raspberry (RSP10551)
- 0.261 QUEEN JESUS (RSP10105)
- 0.263 Blueberry Cheesecake (RSP10680)
- 0.265 RKM-2018-034 (RSP11126)
- 0.266 RKM-2018-009 (RSP11100)
- 0.270 Hermaphrodite ResearchSample2 (RSP11050)
- 0.271 Hermaphrodite Research Sample1 (RSP11049)
- 0.273 Pie Hoe (RSP11073)
- 0.275 Blue Dream (RSP11033)
- 0.278 Kimbo Slice (RSP10997)
- 0.283 Golden Goat 2 (RSP10991)
Most genetically distant strains (All Samples)
- 0.452 Cherry Blossom (RSP11317)
- 0.441 Cherry Blossom (RSP11333)
- 0.439 Cherry Blossom (RSP11324)
- 0.429 Cherry Blossom (RSP11300)
- 0.427 Cherry Blossom (RSP11306)
- 0.427 80E (RSP11213)
- 0.425 Cherry Blossom (RSP11318)
- 0.425 Unknown- Cherry Wine - 001 (RSP11268)
- 0.423 Cherry Blossom (RSP11311)
- 0.420 Cherry Blossom (RSP11301)
- 0.419 Cherry Blossom (RSP11314)
- 0.416 Cherry Blossom (RSP11325)
- 0.412 Avidekel (RSP10938)
- 0.411 Cherry Blossom (RSP11328)
- 0.410 Cherry Blossom (RSP11322)
- 0.406 Wife (RSP11148)
- 0.405 80E (RSP11212)
- 0.404 Cherry Blossom (RSP11329)
- 0.402 Cherry Blossom (RSP11326)
- 0.400 80E (RSP11211)
Most genetically distant strains (Base Tree)
- 0.399 Cbot-2019-005 (RSP11133)
- 0.397 Cherry (RSP11142)
- 0.372 Kush Hemp E1 (RSP11128)
- 0.365 Cherry (RSP11143)
- 0.360 Carmagnola (RSP11037)
- 0.357 RKM-2018-006 (RSP11097)
- 0.351 Monoica (RSP10241)
- 0.345 Futura 75 (RSP10664)
- 0.343 JL yellow (RSP11075)
- 0.342 Carmagnola (RSP10979)
- 0.339 Lovrin (RSP10658)
- 0.338 Santhica27 (RSP11047)
- 0.338 RKM-2018-022 (RSP11114)
- 0.337 Feral (RSP10890)
- 0.336 KYRG-11 (RSP11051)
- 0.335 Fedora 17 (RSP10661)
- 0.335 Ivory (RSP10668)
- 0.333 Kyrgyz Gold (RSP11054)
- 0.333 USO 31 (RSP10981)
- 0.333 Recon (RSP10755)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 119
- Concordance:
- 82
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 12
- Concordance:
- 12
Blockchain Registration Information
- Transaction ID
-
c46e1aa4f5996c9c
faeba164721564a9 59a14b8fa150effc 4f55e26b0ce335ef - Stamping Certificate
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- SHASUM Hash
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56ab644484d1b77e
705a31d7daccdeea 6481a6e1f7958c2f 9620cceda978794f