RKM-2018-004
RSP 11096
Grower: R-Kiem Seeds
General Information
- Sample Name
- RKM-2018-005
- Accession Date
- September 6, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T |
Nearest genetic relatives (All Samples)
- 0.003 RKM-2018-004 (RSP11095)
- 0.176 East Coast Sour Diesel (RSP10243)
- 0.177 RKM-2018-033 (RSP11125)
- 0.180 Pai 60w (RSP11743)
- 0.185 Motor Breath #15 (RSP12093)
- 0.187 Sour D (RSP11343)
- 0.189 Super Sour Diesel (RSP11191)
- 0.190 New York City Deisel (RSP11225)
- 0.193 Dog Patch (RSP11725)
- 0.193 RKM-2018-002 (RSP11093)
- 0.204 501st OG (RSP11241)
- 0.215 Peach Cresendo (RSP12483)
- 0.218 NSPM1 (RSP11362)
- 0.220 CHEM4 (RSP12090)
- 0.221 Whitey (RSP11363)
- 0.223 Rugburn OG (RSP11353)
- 0.224 Mother s Milk No 31 (RSP11623)
- 0.225 Triangle Kush x Square Wave BX (RSP12100)
- 0.225 Trump x Trump (RSP11466)
- 0.227 Domnesia (RSP11184)
Nearest genetic relatives (Base Tree)
- 0.180 RKM-2018-033 (RSP11125)
- 0.192 RKM-2018-002 (RSP11093)
- 0.245 RKM-2018-032 (RSP11124)
- 0.251 Blueberry Cheesecake (RSP10684)
- 0.256 Durban Poison (RSP11014)
- 0.260 Sour Raspberry (RSP10551)
- 0.265 Skywalker OG (RSP10837)
- 0.265 RKM-2018-026 (RSP11118)
- 0.273 Blueberry Cheesecake (RSP10680)
- 0.276 Liberty Haze (RSP11000)
- 0.279 RKM-2018-009 (RSP11100)
- 0.281 Queen Jesus (RSP10105)
- 0.283 RKM-2018-029 (RSP11121)
- 0.283 The Gift (RSP10988)
- 0.287 Blue Dream (RSP11033)
- 0.288 Hermaphrodite Research Sample1 (RSP11049)
- 0.288 RKM-2018-020 (RSP11112)
- 0.290 Pie Hoe (RSP11073)
- 0.290 RKM-2018-034 (RSP11126)
- 0.295 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.441 Northern Skunk (RSP11456)
- 0.439 80E (RSP11213)
- 0.427 Cherry Blossom (RSP11317)
- 0.423 Cherry Fog XL (RSP11458)
- 0.419 80E (RSP11212)
- 0.416 Tiger Tail -30- (RSP11484)
- 0.413 Cherry Blossom (RSP11324)
- 0.413 Tanao Sri -46- (RSP11486)
- 0.412 JL 3rd Gen Father (RSP11196)
- 0.411 Cherry Blossom (RSP11333)
- 0.410 Cherry Blossom (RSP11300)
- 0.409 80E (RSP11211)
- 0.409 Cherry Blossom (RSP11311)
- 0.409 Cherry Blossom (RSP11306)
- 0.408 CS (RSP11208)
- 0.408 Big Bud (SRR14708270)
- 0.404 Unknown--Cherry Wine---001- (RSP11268)
- 0.403 Cherry Blossom (RSP11318)
- 0.402 Cherry Blossom (RSP11301)
- 0.400 Cherry Blossom (RSP11329)
Most genetically distant strains (Base Tree)
- 0.403 Cherry (RSP11142)
- 0.401 Cbot-2019-005 (RSP11133)
- 0.391 Kush Hemp E1 (RSP11128)
- 0.386 Monoica (RSP10241)
- 0.380 Carmagnola (RSP11037)
- 0.380 JL yellow (RSP11075)
- 0.378 RKM-2018-006 (RSP11097)
- 0.376 RKM-2018-022 (RSP11114)
- 0.370 Cherry (RSP11143)
- 0.369 USO 31 (RSP10981)
- 0.366 Feral (RSP10890)
- 0.363 Carmagnola (RSP10979)
- 0.362 Fedora 17 (RSP10661)
- 0.361 Lovrin (RSP10658)
- 0.361 Futura 75 (RSP10664)
- 0.356 KYRG-11 (RSP11051)
- 0.356 Santhica27 (RSP11047)
- 0.355 Black Beauty (RSP11035)
- 0.354 Recon (RSP10755)
- 0.353 Tisza (RSP11044)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 119
- Concordance:
- 82
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 12
- Concordance:
- 12
Blockchain Registration Information
- Transaction ID
-
c46e1aa4f5996c9c
faeba164721564a9 59a14b8fa150effc 4f55e26b0ce335ef - Stamping Certificate
- Download PDF (856.9 KB)
- SHASUM Hash
-
56ab644484d1b77e
705a31d7daccdeea 6481a6e1f7958c2f 9620cceda978794f