RKM-2018-008

RSP 11099

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0411
male female RSP11099

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1124G>C p.Arg375Thr missense variant moderate contig700 1950514

IGV: Start, Jump

C/G
NGS:
0.015
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.1105C>G p.Pro369Ala missense variant moderate contig700 1950533

IGV: Start, Jump

G/C
NGS:
0.013
C90:
0.000
PKSG-2b

UniProt

c.995C>T p.Ser332Phe missense variant moderate contig700 1950643

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.008 The Gift (RSP10988)
  2. 0.131 ILM (RSP12623)
  3. 0.135 Pure Power Plant (RSP11265)
  4. 0.163 New BSR (RSP12104)
  5. 0.165 Gorilla Cookies (RSP11231)
  6. 0.169 Black Triangle (RSP11638)
  7. 0.173 RKM-2018-017 (RSP11109)
  8. 0.173 RKM-2018-021 (RSP11113)
  9. 0.174 RKM-2018-032 (RSP11124)
  10. 0.177 Mendo Purple (RSP11494)
  11. 0.180 Deadhead OG (RSP11463)
  12. 0.181 GMO x Poison Momosa (RSP12500)
  13. 0.182 SFVxTK (RSP11072)
  14. 0.184 Rugburn OG (RSP11353)
  15. 0.186 GMO x The inhaler (RSP12508)
  16. 0.186 JABBA S STASH (RSP11348)
  17. 0.187 RKM-2018-013 (RSP11104)
  18. 0.187 GG4 (RSP12096)
  19. 0.188 Skywalker OG (RSP10837)
  20. 0.191 RKM-2018-034 (RSP11126)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.012 The Gift (RSP10988)
  2. 0.164 RKM-2018-032 (RSP11124)
  3. 0.185 Skywalker OG (RSP10837)
  4. 0.188 RKM-2018-034 (RSP11126)
  5. 0.207 Kush Hemp E1 (RSP11128)
  6. 0.208 Kimbo Slice (RSP10997)
  7. 0.215 Pie Hoe (RSP11073)
  8. 0.230 RKM-2018-026 (RSP11118)
  9. 0.246 Blueberry Cheesecake (RSP10684)
  10. 0.261 RKM-2018-033 (RSP11125)
  11. 0.265 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.271 Blueberry Cheesecake (RSP10680)
  13. 0.276 Golden Goat 2 (RSP10991)
  14. 0.279 Liberty Haze (RSP11000)
  15. 0.279 RKM-2018-020 (RSP11112)
  16. 0.282 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.285 Recon (RSP10755)
  18. 0.290 RKM-2018-004 (RSP11096)
  19. 0.297 Tygra (RSP10667)
  20. 0.298 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.456 Cherry Blossom (RSP11328)
  2. 0.454 Cherry Blossom (RSP11318)
  3. 0.448 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.446 Cherry Blossom (RSP11323)
  5. 0.441 Unknown--Cherry Wine---003- (RSP11270)
  6. 0.431 Cherry Blossom (RSP11301)
  7. 0.427 Cherry Blossom (RSP11300)
  8. 0.423 Unknown--Cherry Wine---002- (RSP11269)
  9. 0.422 Cherry Blossom (RSP11298)
  10. 0.421 Cherry Blossom (RSP11309)
  11. 0.414 Cherry Blossom (RSP11312)
  12. 0.413 Cherry Blossom (RSP11274)
  13. 0.411 Cherry Blossom (RSP11311)
  14. 0.409 80E (RSP11213)
  15. 0.407 Cherry Blossom (RSP11331)
  16. 0.407 Northern Lights (RSP11501)
  17. 0.407 Tanao Sri -46- (RSP11486)
  18. 0.405 Cherry Blossom (RSP11306)
  19. 0.403 Cherry Blossom (RSP11330)
  20. 0.402 Cherry Blossom (RSP11325)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.401 JL yellow (RSP11075)
  2. 0.400 Cherry (RSP11142)
  3. 0.392 Cbot-2019-005 (RSP11133)
  4. 0.379 Cbot-2019-004 (RSP11132)
  5. 0.377 Cherry (RSP11143)
  6. 0.375 Feral (RSP10890)
  7. 0.371 Carmagnola (RSP11037)
  8. 0.368 RKM-2018-006 (RSP11097)
  9. 0.367 RKM-2018-027 (RSP11119)
  10. 0.367 Monoica (RSP10241)
  11. 0.361 Carmagnola (RSP10979)
  12. 0.357 Black Beauty (RSP11035)
  13. 0.356 Cbot-2019-001 (RSP11129)
  14. 0.355 Blueberry Cheesecake (RSP10672)
  15. 0.354 Italian Kiss (RSP11034)
  16. 0.353 RKM-2018-023 (RSP11115)
  17. 0.352 RKM-2018-003 (RSP11094)
  18. 0.351 RKM-2018-031 (RSP11123)
  19. 0.351 Lovrin (RSP10658)
  20. 0.342 RKM-2018-028 (RSP11120)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448505
Overlapping SNPs:
108
Concordance:
108

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495308
Overlapping SNPs:
13
Concordance:
13

Blockchain Registration Information

Transaction ID
b52b1ebc5e2e2ec762a96cd640d4bec3844f8d4363ab829f703de712f9c3d638
Stamping Certificate
Download PDF (853.3 KB)
SHASUM Hash
77c367b7cb3927aa2729d44240e2dbcbb7245cb44455629c74a5fb02117e514c
QR code for RSP11099

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