RKM-2018-013

RSP 11104

Grower: R-Kiem Seeds

General Information

Accession Date
September 6, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.9%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0450
male female RSP11104

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.063 SFVxTK (RSP11072)
  2. 0.071 Skywalker OG (RSP10837)
  3. 0.072 Red Eye OG (RSP11190)
  4. 0.079 Absolute OG (RSP11455)
  5. 0.085 East side OG (RSP12089)
  6. 0.104 SourD (RSP12092)
  7. 0.120 Rugburn OG (RSP11353)
  8. 0.159 Bueller F3 (RSP12503)
  9. 0.160 RKM-2018-012 (RSP11103)
  10. 0.161 Pure Power Plant (RSP11265)
  11. 0.162 Pie Hoe (RSP11073)
  12. 0.166 501st OG (RSP11241)
  13. 0.166 Deadhead OG (RSP11463)
  14. 0.174 RKM-2018-026 (RSP11118)
  15. 0.175 Casco Kush (RSP11167)
  16. 0.186 RKM-2018-034 (RSP11126)
  17. 0.187 RKM-2018-008 (RSP11099)
  18. 0.190 Gorilla Cookies (RSP11231)
  19. 0.191 Motor Breath #15 (RSP12093)
  20. 0.193 Garlic (RSP11341)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.075 Skywalker OG (RSP10837)
  2. 0.165 Pie Hoe (RSP11073)
  3. 0.176 RKM-2018-026 (RSP11118)
  4. 0.177 RKM-2018-034 (RSP11126)
  5. 0.187 The Gift (RSP10988)
  6. 0.220 RKM-2018-032 (RSP11124)
  7. 0.241 RKM-2018-002 (RSP11093)
  8. 0.246 Blueberry Cheesecake (RSP10684)
  9. 0.247 RKM-2018-020 (RSP11112)
  10. 0.249 Hermaphrodite ResearchSample2 (RSP11050)
  11. 0.256 Kimbo Slice (RSP10997)
  12. 0.258 RKM-2018-004 (RSP11096)
  13. 0.258 Liberty Haze (RSP11000)
  14. 0.260 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.263 RKM-2018-033 (RSP11125)
  16. 0.280 Kush Hemp E1 (RSP11128)
  17. 0.289 Gold Cracker (RSP11048)
  18. 0.290 Tygra (RSP10667)
  19. 0.296 Blueberry Cheesecake (RSP10680)
  20. 0.299 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.487 Unknown--Cherry Wine---001- (RSP11268)
  2. 0.483 Cherry Blossom (RSP11318)
  3. 0.474 Cherry Blossom (RSP11301)
  4. 0.465 Cherry Blossom (RSP11323)
  5. 0.461 Tanao Sri -46- (RSP11486)
  6. 0.458 Northern Skunk (RSP11456)
  7. 0.456 Unknown--Cherry Wine---003- (RSP11270)
  8. 0.451 Unknown--Cherry Wine---002- (RSP11269)
  9. 0.444 Cherry Blossom (RSP11328)
  10. 0.442 JL 3rd Gen Mother (RSP11214)
  11. 0.442 JL yellow (RSP11075)
  12. 0.440 Wife (RSP11148)
  13. 0.437 Cherry Blossom (RSP11300)
  14. 0.430 Cherry Blossom (RSP11312)
  15. 0.427 JL X NSPM1 12 (RSP11472)
  16. 0.426 Cherry Blossom (RSP11325)
  17. 0.426 Cherry Blossom (RSP11315)
  18. 0.425 Cherry Blossom (RSP11298)
  19. 0.424 JL Cross 25 (RSP11526)
  20. 0.423 Brunswick High (RSP11164)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.432 JL yellow (RSP11075)
  2. 0.393 Cbot-2019-005 (RSP11133)
  3. 0.392 Cherry (RSP11142)
  4. 0.388 Cherry (RSP11143)
  5. 0.388 RKM-2018-006 (RSP11097)
  6. 0.380 Black Beauty (RSP11035)
  7. 0.377 Cbot-2019-004 (RSP11132)
  8. 0.376 Feral (RSP10890)
  9. 0.371 Carmagnola (RSP11037)
  10. 0.366 RKM-2018-023 (RSP11115)
  11. 0.364 Cbot-2019-001 (RSP11129)
  12. 0.361 Blueberry Cheesecake (RSP10672)
  13. 0.359 Carmagnola (RSP10979)
  14. 0.358 RKM-2018-028 (RSP11120)
  15. 0.355 CST (RSP11002)
  16. 0.354 Monoica (RSP10241)
  17. 0.352 RKM-2018-031 (RSP11123)
  18. 0.350 Italian Kiss (RSP11034)
  19. 0.349 RKM-2018-003 (RSP11094)
  20. 0.348 Santhica27 (RSP11047)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347029
Overlapping SNPs:
118
Concordance:
101

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
263b6936ba2801937abfa74c8101e941f8b09c2a01c19f1702d3b86b1e1ae083
Stamping Certificate
Download PDF (860.5 KB)
SHASUM Hash
9c5522d477748b0c0a0a351a8650938311eb625b8a4ff47799382ebb0a5c5af2
QR code for RSP11104

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