RKM-2018-018

RSP 11110

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0402
male female RSP11110

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.147 Hermaphrodite Research Sample1 (RSP11049)
  2. 0.147 Hermaphrodite Research Sample1 (RSP11042)
  3. 0.157 Bordello (RSP11228)
  4. 0.195 Blue Dream (RSP11010)
  5. 0.197 RKM-2018-028 (RSP11120)
  6. 0.205 Sour D (RSP11343)
  7. 0.215 Jacks Cleaner (RSP11347)
  8. 0.217 Blue Dream (RSP11007)
  9. 0.219 Tangerine Haze (RSP10995)
  10. 0.219 Blue Dream (RSP11017)
  11. 0.225 Snoops Dream (RSP11003)
  12. 0.226 Super Blue Dream (RSP11011)
  13. 0.226 Blue Dream (RSP11006)
  14. 0.227 UP Sunrise (RSP10989)
  15. 0.227 Blue Dream (RSP11342)
  16. 0.229 Snoops Dream (RSP11031)
  17. 0.229 RKM-2018-023 (RSP11115)
  18. 0.230 Blue Dream (RSP11009)
  19. 0.230 Blue Dream (RSP11008)
  20. 0.232 Black Jack (RSP10603)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.145 Hermaphrodite Research Sample1 (RSP11049)
  2. 0.198 RKM-2018-028 (RSP11120)
  3. 0.228 RKM-2018-023 (RSP11115)
  4. 0.234 Durban Poison (RSP11014)
  5. 0.237 Sour Raspberry (RSP10551)
  6. 0.241 Golden Goat 2 (RSP10991)
  7. 0.242 Blue Dream (RSP11033)
  8. 0.244 UP Sunrise (RSP10989)
  9. 0.248 Italian Kiss (RSP11034)
  10. 0.255 Skunk 18 (RSP11038)
  11. 0.258 RKM-2018-003 (RSP11094)
  12. 0.260 Blueberry Cheesecake (RSP10684)
  13. 0.261 Gold Cracker (RSP11048)
  14. 0.264 Liberty Haze (RSP11000)
  15. 0.266 Black Beauty (RSP11035)
  16. 0.273 Cbot-2019-006 (RSP11134)
  17. 0.279 RKM-2018-027 (RSP11119)
  18. 0.281 RKM-2018-033 (RSP11125)
  19. 0.282 RKM-2018-029 (RSP11121)
  20. 0.283 RKM-2018-002 (RSP11093)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.493 Cherry Blossom (RSP11328)
  2. 0.490 Cherry Blossom (RSP11311)
  3. 0.490 Cherry Blossom (RSP11314)
  4. 0.480 Cherry Blossom (RSP11333)
  5. 0.478 Cherry Blossom (RSP11334)
  6. 0.475 Cherry Blossom (RSP11324)
  7. 0.471 Cherry Blossom (RSP11317)
  8. 0.449 Cherry Blossom (RSP11330)
  9. 0.447 Cherry Blossom (RSP11309)
  10. 0.440 Cbot-2019-005 (RSP11133)
  11. 0.438 80E (RSP11213)
  12. 0.433 Cherry Blossom CBG (RSP11303)
  13. 0.433 Cherry Blossom (RSP11300)
  14. 0.430 Cherry Blossom (RSP11332)
  15. 0.427 Feral (RSP11205)
  16. 0.427 Cherry Blossom (RSP11308)
  17. 0.427 80E (RSP11211)
  18. 0.425 Cherry Blossom (RSP11335)
  19. 0.421 Cherry Blossom (RSP11313)
  20. 0.420 Unknown- Cherry Wine - 003 (RSP11270)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.440 Cbot-2019-005 (RSP11133)
  2. 0.412 Cherry (RSP11142)
  3. 0.382 Monoica (RSP10241)
  4. 0.377 Kush Hemp E1 (RSP11128)
  5. 0.376 Feral (RSP10890)
  6. 0.373 Ivory (RSP10668)
  7. 0.373 RKM-2018-026 (RSP11118)
  8. 0.372 Carmagnola (RSP11037)
  9. 0.364 Santhica27 (RSP11047)
  10. 0.363 Futura 75 (RSP10664)
  11. 0.359 Kyrgyz Gold (RSP11054)
  12. 0.358 Carmagnola (RSP10979)
  13. 0.350 Tisza (RSP11044)
  14. 0.349 Lovrin (RSP10658)
  15. 0.348 USO 31 (RSP10981)
  16. 0.347 Fedora 17 (RSP10661)
  17. 0.347 KYRG-11 (RSP11051)
  18. 0.346 Cherry (RSP11143)
  19. 0.345 Skywalker OG (RSP10837)
  20. 0.344 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448661
Overlapping SNPs:
92
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
3200c54a54ef2f422704d8bc0e5a21768a584a7d51c57fee854b8688d57a6d9f
Stamping Certificate
Download PDF (848.2 KB)
SHASUM Hash
940f28a91214d6d3daf8ce99561fedb7f7834dff2b76237b01c7f34aff6b3dc4
QR code for RSP11110

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