RKM-2018-019
RSP 11111
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1950864 | C/T | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
DXR-2 | c.431C>G | p.Ala144Gly | missense variant | moderate | contig380 | 287760 | G/C | |
aPT4 | c.97T>C | p.Tyr33His | missense variant | moderate | contig121 | 2828753 | T/C |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 |
c.697_709del |
p.Phe233fs | frameshift variant | high | contig121 | 2830974 |
TTTTAGATGGAA |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.207 RKM-2018-022 (RSP11114)
- 0.220 RKM-2018-001 (RSP11092)
- 0.232 Miss X (RSP10999)
- 0.233 North Traveler (RSP11163)
- 0.238 Erez (RSP10942)
- 0.240 Strawberry Cough (RSP11356)
- 0.243 White Label 3 (RSP11338)
- 0.244 Dominion Skunk (RSP11354)
- 0.246 Flo (RSP11232)
- 0.246 Alaska USA (RSP11171)
- 0.250 Square Wave (RSP11344)
- 0.253 MENDO BREATH (RSP11242)
- 0.253 Big Bud (RSP11221)
- 0.258 Domnesia (RSP11184)
- 0.258 White Label 2 (RSP11337)
- 0.260 Eran Almog (RSP10937)
- 0.261 Recon (RSP10755)
- 0.262 White Chronic (RSP11220)
- 0.263 QUEEN JESUS (RSP10105)
- 0.263 Liberty Haze (RSP10946)
Nearest genetic relatives (Base Tree)
- 0.206 RKM-2018-022 (RSP11114)
- 0.259 QUEEN JESUS (RSP10105)
- 0.263 Liberty Haze (RSP11000)
- 0.268 Recon (RSP10755)
- 0.272 Durban Poison (RSP11014)
- 0.282 Blueberry Cheesecake (RSP10684)
- 0.288 RKM-2018-034 (RSP11126)
- 0.290 Gold Cracker (RSP11048)
- 0.293 RKM-2018-029 (RSP11121)
- 0.293 RKM-2018-031 (RSP11123)
- 0.294 Hermaphrodite ResearchSample2 (RSP11050)
- 0.300 Black Beauty (RSP11035)
- 0.300 RKM-2018-005 (RSP11096)
- 0.300 Blueberry Cheesecake (RSP10672)
- 0.304 UP Sunrise (RSP10989)
- 0.305 Golden Goat 2 (RSP10991)
- 0.306 Pie Hoe (RSP11073)
- 0.308 Cbot-2019-006 (RSP11134)
- 0.308 RKM-2018-023 (RSP11115)
- 0.314 KYRG-11 (RSP11051)
Most genetically distant strains (All Samples)
- 0.486 Cherry Blossom (RSP11328)
- 0.467 Cherry Blossom (RSP11323)
- 0.462 Cherry Blossom (RSP11301)
- 0.458 Cherry Blossom (RSP11309)
- 0.457 Cherry Blossom (RSP11325)
- 0.456 Cherry Blossom (RSP11306)
- 0.441 Cherry Blossom CBG (RSP11303)
- 0.438 Cherry Blossom (RSP11298)
- 0.433 Cherry Blossom (RSP11330)
- 0.431 AVIDEKEL USA (RSP11169)
- 0.428 Wife (RSP11148)
- 0.427 Unknown- Cherry Wine - 003 (RSP11270)
- 0.426 Cherry Blossom (RSP11318)
- 0.425 AVIDEKEL 2 0 (RSP11174)
- 0.419 Unknown- Cherry Wine - 001 (RSP11268)
- 0.414 Cherry Blossom (RSP11315)
- 0.414 Cherry Blossom (RSP11312)
- 0.414 Cherry Blossom (RSP11322)
- 0.413 Cherry Blossom (RSP11300)
- 0.411 Avidekel (RSP10938)
Most genetically distant strains (Base Tree)
- 0.393 JL yellow (RSP11075)
- 0.388 Cbot-2019-001 (RSP11129)
- 0.374 Cbot-2019-005 (RSP11133)
- 0.366 Cherry (RSP11143)
- 0.356 Cbot-2019-004 (RSP11132)
- 0.355 RKM-2018-002 (RSP11093)
- 0.351 Monoica (RSP10241)
- 0.349 Santhica27 (RSP11047)
- 0.349 Feral (RSP10890)
- 0.348 Carmagnola (RSP11037)
- 0.347 Carmagnola (RSP10979)
- 0.343 RKM-2018-006 (RSP11097)
- 0.342 Jiangji (RSP10653)
- 0.340 Sour Raspberry (RSP10551)
- 0.339 USO 31 (RSP10981)
- 0.339 Blue Dream (RSP11033)
- 0.338 Kush Hemp E1 (RSP11128)
- 0.337 Italian Kiss (RSP11034)
- 0.335 Hermaphrodite Research Sample1 (RSP11049)
- 0.335 RKM-2018-027 (RSP11119)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 93
- Concordance:
- 59
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 2
- Concordance:
- 2
Blockchain Registration Information
- Transaction ID
-
d06e2d0a5187b158
6ce55c61ff36068f 4aa5e7f0e2413ca9 6b9d1728091b109c - Stamping Certificate
- Download PDF (852.9 KB)
- SHASUM Hash
-
421c2f4e2f25875f
dd7e3c6b2b10b52f 0c33395b960e1f6f ed8742f1cc1d9460