RKM-2018-019

RSP 11111

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.78%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0423
male female RSP11111

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.431C>G p.Ala144Gly missense variant moderate contig380 287760

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.550
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.697_709delTTTAGATGGAAGC p.Phe233fs frameshift variant high contig121 2830974

IGV: Start, Jump

TTTTAGATGGAAGC/T
NGS:
0.002
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.207 RKM-2018-022 (RSP11114)
  2. 0.220 RKM-2018-001 (RSP11092)
  3. 0.232 Miss X (RSP10999)
  4. 0.233 North Traveler (RSP11163)
  5. 0.238 Erez (RSP10942)
  6. 0.240 Strawberry Cough (RSP11356)
  7. 0.243 White Label 3 (RSP11338)
  8. 0.244 Dominion Skunk (RSP11354)
  9. 0.246 Flo (RSP11232)
  10. 0.246 Alaska USA (RSP11171)
  11. 0.250 Square Wave (RSP11344)
  12. 0.253 MENDO BREATH (RSP11242)
  13. 0.253 Big Bud (RSP11221)
  14. 0.258 Domnesia (RSP11184)
  15. 0.258 White Label 2 (RSP11337)
  16. 0.260 Eran Almog (RSP10937)
  17. 0.261 Recon (RSP10755)
  18. 0.262 White Chronic (RSP11220)
  19. 0.263 QUEEN JESUS (RSP10105)
  20. 0.263 Liberty Haze (RSP10946)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.206 RKM-2018-022 (RSP11114)
  2. 0.259 QUEEN JESUS (RSP10105)
  3. 0.263 Liberty Haze (RSP11000)
  4. 0.268 Recon (RSP10755)
  5. 0.272 Durban Poison (RSP11014)
  6. 0.282 Blueberry Cheesecake (RSP10684)
  7. 0.288 RKM-2018-034 (RSP11126)
  8. 0.290 Gold Cracker (RSP11048)
  9. 0.293 RKM-2018-029 (RSP11121)
  10. 0.293 RKM-2018-031 (RSP11123)
  11. 0.294 Hermaphrodite ResearchSample2 (RSP11050)
  12. 0.300 Black Beauty (RSP11035)
  13. 0.300 RKM-2018-005 (RSP11096)
  14. 0.300 Blueberry Cheesecake (RSP10672)
  15. 0.304 UP Sunrise (RSP10989)
  16. 0.305 Golden Goat 2 (RSP10991)
  17. 0.306 Pie Hoe (RSP11073)
  18. 0.308 Cbot-2019-006 (RSP11134)
  19. 0.308 RKM-2018-023 (RSP11115)
  20. 0.314 KYRG-11 (RSP11051)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.486 Cherry Blossom (RSP11328)
  2. 0.467 Cherry Blossom (RSP11323)
  3. 0.462 Cherry Blossom (RSP11301)
  4. 0.458 Cherry Blossom (RSP11309)
  5. 0.457 Cherry Blossom (RSP11325)
  6. 0.456 Cherry Blossom (RSP11306)
  7. 0.441 Cherry Blossom CBG (RSP11303)
  8. 0.438 Cherry Blossom (RSP11298)
  9. 0.433 Cherry Blossom (RSP11330)
  10. 0.431 AVIDEKEL USA (RSP11169)
  11. 0.428 Wife (RSP11148)
  12. 0.427 Unknown- Cherry Wine - 003 (RSP11270)
  13. 0.426 Cherry Blossom (RSP11318)
  14. 0.425 AVIDEKEL 2 0 (RSP11174)
  15. 0.419 Unknown- Cherry Wine - 001 (RSP11268)
  16. 0.414 Cherry Blossom (RSP11315)
  17. 0.414 Cherry Blossom (RSP11312)
  18. 0.414 Cherry Blossom (RSP11322)
  19. 0.413 Cherry Blossom (RSP11300)
  20. 0.411 Avidekel (RSP10938)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.393 JL yellow (RSP11075)
  2. 0.388 Cbot-2019-001 (RSP11129)
  3. 0.374 Cbot-2019-005 (RSP11133)
  4. 0.366 Cherry (RSP11143)
  5. 0.356 Cbot-2019-004 (RSP11132)
  6. 0.355 RKM-2018-002 (RSP11093)
  7. 0.351 Monoica (RSP10241)
  8. 0.349 Santhica27 (RSP11047)
  9. 0.349 Feral (RSP10890)
  10. 0.348 Carmagnola (RSP11037)
  11. 0.347 Carmagnola (RSP10979)
  12. 0.343 RKM-2018-006 (RSP11097)
  13. 0.342 Jiangji (RSP10653)
  14. 0.340 Sour Raspberry (RSP10551)
  15. 0.339 USO 31 (RSP10981)
  16. 0.339 Blue Dream (RSP11033)
  17. 0.338 Kush Hemp E1 (RSP11128)
  18. 0.337 Italian Kiss (RSP11034)
  19. 0.335 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.335 RKM-2018-027 (RSP11119)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347153
Overlapping SNPs:
93
Concordance:
59

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495166
Overlapping SNPs:
2
Concordance:
2

Blockchain Registration Information

Transaction ID
d06e2d0a5187b1586ce55c61ff36068f4aa5e7f0e2413ca96b9d1728091b109c
Stamping Certificate
Download PDF (852.9 KB)
SHASUM Hash
421c2f4e2f25875fdd7e3c6b2b10b52f0c33395b960e1f6fed8742f1cc1d9460
QR code for RSP11111

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