RKM-2018-022

RSP 11114

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0412
male female RSP11114

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.207 RKM-2018-019 (RSP11111)
  2. 0.214 Erez (RSP10942)
  3. 0.218 Alaska USA (RSP11171)
  4. 0.227 Eran Almog (RSP10937)
  5. 0.235 Strawberry Cough (RSP11356)
  6. 0.238 RKM-2018-001 (RSP11092)
  7. 0.238 Dominion Skunk (RSP11354)
  8. 0.242 RKM-2018-030 (RSP11122)
  9. 0.245 Jacks Cleaner (RSP11347)
  10. 0.249 Saint Jack (RSP11179)
  11. 0.250 Tangerine Haze (RSP10995)
  12. 0.250 Recon (RSP10755)
  13. 0.251 White Label 2 (RSP11337)
  14. 0.251 Square Wave (RSP11344)
  15. 0.251 Serious Happiness (RSP10763)
  16. 0.254 Cheese (RSP10460)
  17. 0.255 Big Bud (RSP11221)
  18. 0.258 RKM-2018-007 (RSP11098)
  19. 0.260 Gold Cracker (RSP11048)
  20. 0.263 Cbot-2019-006 (RSP11134)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.206 RKM-2018-019 (RSP11111)
  2. 0.244 Recon (RSP10755)
  3. 0.259 Gold Cracker (RSP11048)
  4. 0.264 RKM-2018-028 (RSP11120)
  5. 0.265 Cbot-2019-006 (RSP11134)
  6. 0.266 Liberty Haze (RSP11000)
  7. 0.272 RKM-2018-006 (RSP11097)
  8. 0.277 RKM-2018-031 (RSP11123)
  9. 0.277 RKM-2018-020 (RSP11112)
  10. 0.278 Golden Goat 2 (RSP10991)
  11. 0.279 Italian Kiss (RSP11034)
  12. 0.279 Blueberry Cheesecake (RSP10684)
  13. 0.279 Durban Poison (RSP11014)
  14. 0.280 RKM-2018-003 (RSP11094)
  15. 0.281 Hermaphrodite ResearchSample2 (RSP11050)
  16. 0.282 RKM-2018-027 (RSP11119)
  17. 0.286 RKM-2018-023 (RSP11115)
  18. 0.288 Black Beauty (RSP11035)
  19. 0.291 CST (RSP11002)
  20. 0.297 QUEEN JESUS (RSP10105)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.520 Cherry Blossom (RSP11323)
  2. 0.516 Cherry Blossom (RSP11328)
  3. 0.505 Cherry Blossom (RSP11301)
  4. 0.485 Cherry Blossom (RSP11309)
  5. 0.476 Unknown- Cherry Wine - 001 (RSP11268)
  6. 0.474 Cherry Blossom (RSP11325)
  7. 0.470 Cherry Blossom CBG (RSP11303)
  8. 0.467 Cherry Blossom (RSP11318)
  9. 0.453 Cherry Blossom (RSP11306)
  10. 0.443 Cherry Blossom (RSP11321)
  11. 0.441 Cherry Blossom (RSP11330)
  12. 0.438 Cherry Blossom (RSP11315)
  13. 0.437 AVIDEKEL 2 0 (RSP11174)
  14. 0.437 Cherry Blossom (RSP11327)
  15. 0.435 Unknown- Cherry Wine - 003 (RSP11270)
  16. 0.434 Cherry Blossom (RSP11298)
  17. 0.433 Cherry Blossom (RSP11300)
  18. 0.433 Unknown- Cherry Wine - 002 (RSP11269)
  19. 0.430 Cherry Blossom (RSP11334)
  20. 0.427 Cherry Blossom (RSP11322)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.398 Cbot-2019-005 (RSP11133)
  2. 0.390 Cbot-2019-001 (RSP11129)
  3. 0.388 Cherry (RSP11143)
  4. 0.376 Feral (RSP10890)
  5. 0.370 Carmagnola (RSP10979)
  6. 0.369 Ivory (RSP10668)
  7. 0.368 Cbot-2019-004 (RSP11132)
  8. 0.368 Carmagnola (RSP11037)
  9. 0.365 JL yellow (RSP11075)
  10. 0.364 Santhica27 (RSP11047)
  11. 0.363 Monoica (RSP10241)
  12. 0.357 Blueberry Cheesecake (RSP10680)
  13. 0.356 Tisza (RSP11044)
  14. 0.353 RKM-2018-002 (RSP11093)
  15. 0.351 Kyrgyz Gold (RSP11054)
  16. 0.351 RKM-2018-026 (RSP11118)
  17. 0.350 Futura 75 (RSP10664)
  18. 0.348 Lovrin (RSP10658)
  19. 0.348 Tisza (RSP10659)
  20. 0.347 Tygra (RSP10667)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
10
Concordance:
7

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495156
Overlapping SNPs:
8
Concordance:
6

Blockchain Registration Information

Transaction ID
5708c6437a547b8a956389fbe81e8715b33228a806ec838bd03a88077b95fe4a
Stamping Certificate
Download PDF (872.7 KB)
SHASUM Hash
9c9fa8225ae9de49db4578f66764c4b91fe82079852dbb9f72be1438e895bfd7
QR code for RSP11114

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