RKM-2018-022

RSP 11114

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.21%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0412
male female RSP11114

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.218 PP9 (SRR14708260)
  2. 0.220 Erez 05MAY2017 (RSP10942)
  3. 0.221 Alaska USA (RSP11171)
  4. 0.233 RKM-2018-019 (RSP11111)
  5. 0.233 Eran Almog 05MAY2017 (RSP10937)
  6. 0.250 Big Bud (RSP11221)
  7. 0.251 Cheese (RSP10460)
  8. 0.251 RKM-2018-030 (RSP11122)
  9. 0.253 Strawberry Cough (RSP11356)
  10. 0.254 RKM-2018-001 (RSP11092)
  11. 0.257 Jacks Cleaner (RSP11347)
  12. 0.259 Cherry Gar-See-Ya (RSP11642)
  13. 0.260 Doug s Varin (RSP11243)
  14. 0.260 Recon (RSP10755)
  15. 0.261 Gold Cracker (RSP11048)
  16. 0.261 Tangerine Haze (RSP10995)
  17. 0.261 Domnesia (RSP11184)
  18. 0.262 Liberty Haze (RSP10946)
  19. 0.263 Square Wave (RSP11344)
  20. 0.264 Serious Happiness (RSP10763)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.227 RKM-2018-019 (RSP11111)
  2. 0.260 Recon (RSP10755)
  3. 0.269 Gold Cracker (RSP11048)
  4. 0.274 RKM-2018-028 (RSP11120)
  5. 0.275 Liberty Haze (RSP11000)
  6. 0.285 RKM-2018-003 (RSP11094)
  7. 0.285 RKM-2018-006 (RSP11097)
  8. 0.287 Cbot-2019-006 (RSP11134)
  9. 0.288 Durban Poison (RSP11014)
  10. 0.290 Hermaphrodite ResearchSample2 (RSP11050)
  11. 0.290 RKM-2018-031 (RSP11123)
  12. 0.291 Blueberry Cheesecake (RSP10684)
  13. 0.291 RKM-2018-027 (RSP11119)
  14. 0.293 Italian Kiss (RSP11034)
  15. 0.293 RKM-2018-020 (RSP11112)
  16. 0.298 UP Sunrise (RSP10989)
  17. 0.302 Golden Goat 2 (RSP10991)
  18. 0.304 CST (RSP11002)
  19. 0.304 Black Beauty (RSP11035)
  20. 0.304 Queen Jesus (RSP10105)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.512 Cherry Blossom (RSP11323)
  2. 0.512 Cherry Blossom (RSP11328)
  3. 0.493 Cherry Blossom (RSP11301)
  4. 0.489 Cherry Blossom (RSP11309)
  5. 0.460 Unknown--Cherry Wine---001- (RSP11268)
  6. 0.459 Tanao Sri -46- (RSP11486)
  7. 0.457 Cherry Blossom (RSP11318)
  8. 0.454 Chematonic -Cannatonic x Chemdawg- (RSP11394)
  9. 0.448 Cherry Blossom CBG (RSP11303)
  10. 0.442 Cherry Blossom (RSP11298)
  11. 0.441 Cherry Blossom (RSP11325)
  12. 0.438 Unknown--Cherry Wine---003- (RSP11270)
  13. 0.437 Cherry Blossom (RSP11321)
  14. 0.429 Cherry Blossom (RSP11330)
  15. 0.428 Chem 91 (RSP11185)
  16. 0.428 Cherry Blossom (RSP11327)
  17. 0.420 AVIDEKEL 2 0 (RSP11174)
  18. 0.419 Cherry Blossom (RSP11311)
  19. 0.419 Cherry Blossom (RSP11300)
  20. 0.419 Cherry Blossom (RSP11312)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.401 Feral (RSP10890)
  2. 0.400 RKM-2018-026 (RSP11118)
  3. 0.398 Cbot-2019-001 (RSP11129)
  4. 0.398 JL yellow (RSP11075)
  5. 0.392 Cherry (RSP11143)
  6. 0.390 RKM-2018-002 (RSP11093)
  7. 0.383 Carmagnola (RSP11037)
  8. 0.383 Cbot-2019-005 (RSP11133)
  9. 0.380 Cbot-2019-004 (RSP11132)
  10. 0.378 Monoica (RSP10241)
  11. 0.376 Skywalker OG (RSP10837)
  12. 0.376 RKM-2018-004 (RSP11096)
  13. 0.374 Blueberry Cheesecake (RSP10680)
  14. 0.372 Tisza (RSP11044)
  15. 0.369 Carmagnola (RSP10979)
  16. 0.366 Futura 75 (RSP10664)
  17. 0.364 Santhica27 (RSP11047)
  18. 0.357 Kyrgyz Gold (RSP11054)
  19. 0.357 Fedora 17 (RSP10661)
  20. 0.356 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4450138
Overlapping SNPs:
10
Concordance:
7

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495156
Overlapping SNPs:
8
Concordance:
6

Blockchain Registration Information

Transaction ID
5708c6437a547b8a956389fbe81e8715b33228a806ec838bd03a88077b95fe4a
Stamping Certificate
Download PDF (872.7 KB)
SHASUM Hash
9c9fa8225ae9de49db4578f66764c4b91fe82079852dbb9f72be1438e895bfd7
QR code for RSP11114

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