RKM-2018-023

RSP 11115

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.34%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0386
male female RSP11115

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.1229G>A p.Gly410Glu missense variant moderate contig741 4416599

IGV: Start, Jump

C/T
NGS:
0.039
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632
THCAS c.373G>C p.Val125Leu missense variant moderate contig741 4417455

IGV: Start, Jump

C/G
NGS:
0.050
C90:
0.000

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.493G>A p.Gly165Ser missense variant moderate contig700 1937904

IGV: Start, Jump

G/A
NGS:
0.103
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.188T>G p.Ile63Ser missense variant moderate contig700 1945202

IGV: Start, Jump

A/C
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.188T>A p.Ile63Asn missense variant moderate contig700 1945202

IGV: Start, Jump

A/T
NGS:
0.061
C90:
0.000
PKSG-2a

UniProt

c.187A>T p.Ile63Phe missense variant moderate contig700 1945203

IGV: Start, Jump

T/A
NGS:
0.101
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.67A>T p.Ile23Phe missense variant moderate contig700 1951815

IGV: Start, Jump

T/A
NGS:
0.033
C90:
0.325
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.544G>T p.Gly182Trp missense variant moderate contig700 2721129

IGV: Start, Jump

C/A
NGS:
0.055
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
PKSG-4b

UniProt

c.338G>A p.Gly113Glu missense variant moderate contig700 2721335

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.1319T>A p.Ile440Asn missense variant moderate contig380 285250

IGV: Start, Jump

A/T
NGS:
0.004
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.630_634delTGTCT p.Val211fs frameshift variant high contig121 2840237

IGV: Start, Jump

CTGTCT/C
NGS:
0.004
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

CTGTCT/TTGTCT
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.205 Erez (RSP10942)
  2. 0.207 Alaska USA (RSP11171)
  3. 0.212 Skunk 18 (RSP11038)
  4. 0.214 RKM-2018-027 (RSP11119)
  5. 0.215 Skunk 18 (RSP11030)
  6. 0.217 Black Jack (RSP10603)
  7. 0.218 Cheese (RSP10460)
  8. 0.220 Durban Poison 1 (RSP10996)
  9. 0.222 Serious Happiness (RSP10763)
  10. 0.223 BLACK JACK (RSP11346)
  11. 0.225 RKM-2018-024 (RSP11116)
  12. 0.226 Durban Poison (RSP11014)
  13. 0.227 Jamaican Lions Ancestor (RSP11127)
  14. 0.229 RKM-2018-018 (RSP11110)
  15. 0.229 Durban Poison (RSP10998)
  16. 0.230 Liberty Haze (RSP11000)
  17. 0.230 Liberty Haze (RSP10946)
  18. 0.232 RKM-2018-007 (RSP11098)
  19. 0.232 Gold Cracker (RSP11041)
  20. 0.232 Jacks Cleaner (RSP11347)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.213 Skunk 18 (RSP11038)
  2. 0.213 RKM-2018-027 (RSP11119)
  3. 0.216 Liberty Haze (RSP11000)
  4. 0.225 Durban Poison (RSP11014)
  5. 0.228 RKM-2018-018 (RSP11110)
  6. 0.235 Gold Cracker (RSP11048)
  7. 0.236 Golden Goat 2 (RSP10991)
  8. 0.236 RKM-2018-003 (RSP11094)
  9. 0.254 CST (RSP11002)
  10. 0.255 Italian Kiss (RSP11034)
  11. 0.260 Blueberry Cheesecake (RSP10684)
  12. 0.263 RKM-2018-029 (RSP11121)
  13. 0.263 Blue Dream (RSP11033)
  14. 0.264 Hermaphrodite Research Sample1 (RSP11049)
  15. 0.264 Cbot-2019-006 (RSP11134)
  16. 0.269 RKM-2018-028 (RSP11120)
  17. 0.269 Black Beauty (RSP11035)
  18. 0.269 UP Sunrise (RSP10989)
  19. 0.275 RKM-2018-020 (RSP11112)
  20. 0.279 Hermaphrodite ResearchSample2 (RSP11050)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.465 Cherry Blossom (RSP11317)
  2. 0.458 Cherry Blossom (RSP11333)
  3. 0.453 Cherry Blossom (RSP11323)
  4. 0.452 Cherry Blossom (RSP11314)
  5. 0.451 Cherry Blossom (RSP11328)
  6. 0.447 Cherry Blossom (RSP11311)
  7. 0.444 Cherry Blossom (RSP11324)
  8. 0.437 Cherry Blossom (RSP11334)
  9. 0.436 Cherry Blossom (RSP11306)
  10. 0.435 Unknown- Cherry Wine - 001 (RSP11268)
  11. 0.428 Cherry Blossom (RSP11308)
  12. 0.426 Cherry Blossom (RSP11335)
  13. 0.425 Cherry Blossom (RSP11330)
  14. 0.425 Cherry Blossom (RSP11329)
  15. 0.424 Cherry Blossom (RSP11325)
  16. 0.418 Cherry Blossom CBG (RSP11303)
  17. 0.418 Cbot-2019-005 (RSP11133)
  18. 0.417 Cherry Blossom (RSP11301)
  19. 0.417 80E (RSP11213)
  20. 0.417 Cherry Blossom (RSP11327)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.414 Cbot-2019-005 (RSP11133)
  2. 0.379 RKM-2018-026 (RSP11118)
  3. 0.379 Kush Hemp E1 (RSP11128)
  4. 0.374 Cherry (RSP11142)
  5. 0.370 Santhica27 (RSP11047)
  6. 0.369 Skywalker OG (RSP10837)
  7. 0.366 Ivory (RSP10668)
  8. 0.364 Carmagnola (RSP11037)
  9. 0.361 Feral (RSP10890)
  10. 0.358 Carmagnola (RSP10979)
  11. 0.354 Monoica (RSP10241)
  12. 0.354 USO 31 (RSP10981)
  13. 0.352 Kyrgyz Gold (RSP11054)
  14. 0.350 Fedora 17 (RSP10661)
  15. 0.348 Futura 75 (RSP10664)
  16. 0.348 Lovrin (RSP10658)
  17. 0.345 Tisza (RSP11044)
  18. 0.344 RKM-2018-034 (RSP11126)
  19. 0.342 KYRG-11 (RSP11051)
  20. 0.340 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349125
Overlapping SNPs:
94
Concordance:
61

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495216
Overlapping SNPs:
11
Concordance:
9

Blockchain Registration Information

Transaction ID
c39fac25b74381f4a7478b3127611ca4e7046b6e12817c75b9285f41bd0e4c77
Stamping Certificate
Download PDF (833.2 KB)
SHASUM Hash
91c6309f67882a520d72c32a502719a323ff076e7b47f80334821d2cd2a7a221
QR code for RSP11115

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