RKM-2018-025

RSP 11117

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.52%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0421
male female RSP11117

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.050 0.100 0.150 0.200
clone distance sibling distance more distant
  1. 0.000 RKM-2018-016 (RSP11108)
  2. 0.000 BLACK JACK (RSP11346)
  3. 0.003 Black Jack (RSP10603)
  4. 0.033 RKM-2018-027 (RSP11119)
  5. 0.140 Durban Poison #1 (RSP11013)
  6. 0.141 Durban Poison #1 (RSP10996)
  7. 0.145 Saint Jack (RSP11179)
  8. 0.147 Durban Poison (RSP10998)
  9. 0.150 Durban Poison (RSP11014)
  10. 0.158 Gold Cracker (RSP11048)
  11. 0.158 Gold Cracker (RSP11041)
  12. 0.163 Cheese (RSP10460)
  13. 0.166 Durban Poison (RSP11226)
  14. 0.172 Tangerine Haze (RSP10995)
  15. 0.177 Blue Dream (RSP11007)
  16. 0.179 White Label 1 (RSP11336)
  17. 0.181 UP Sunrise (RSP10989)
  18. 0.183 Lift (RSP11378)
  19. 0.185 Electra (RSP11366)
  20. 0.186 Super Lemon Haze (RSP11641)

Nearest genetic relatives (Base Tree)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.035 RKM-2018-027 (RSP11119)
  2. 0.141 Durban Poison (RSP11014)
  3. 0.164 Gold Cracker (RSP11048)
  4. 0.175 UP Sunrise (RSP10989)
  5. 0.198 Liberty Haze (RSP11000)
  6. 0.209 RKM-2018-003 (RSP11094)
  7. 0.209 Italian Kiss (RSP11034)
  8. 0.222 RKM-2018-006 (RSP11097)
  9. 0.223 RKM-2018-020 (RSP11112)
  10. 0.225 RKM-2018-031 (RSP11123)
  11. 0.228 Blue Dream (RSP11033)
  12. 0.229 CST (RSP11002)
  13. 0.237 RKM-2018-023 (RSP11115)
  14. 0.238 Blueberry Cheesecake (RSP10684)
  15. 0.240 Golden Goat 2 (RSP10991)
  16. 0.247 Cbot-2019-004 (RSP11132)
  17. 0.253 Recon (RSP10755)
  18. 0.254 RKM-2018-018 (RSP11110)
  19. 0.255 Hermaphrodite Research Sample1 (RSP11049)
  20. 0.266 RKM-2018-009 (RSP11100)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.454 Cherry Blossom (RSP11323)
  2. 0.421 Cherry Blossom (RSP11328)
  3. 0.417 Cherry Blossom (RSP11311)
  4. 0.413 Cherry Blossom (RSP11309)
  5. 0.408 CS (RSP11208)
  6. 0.407 Cherry Blossom (RSP11298)
  7. 0.405 Cherry Blossom (RSP11314)
  8. 0.402 Feral (RSP11205)
  9. 0.398 Carmaleonte (RSP11207)
  10. 0.396 Cherry Blossom (RSP11312)
  11. 0.394 Feral (RSP11206)
  12. 0.394 80E (RSP11213)
  13. 0.393 R1in136 (SRR14708227)
  14. 0.390 Cherry Blossom (RSP11334)
  15. 0.390 Feral (RSP10890)
  16. 0.390 Cherry Blossom (RSP11317)
  17. 0.389 Fatso (RSP11741)
  18. 0.389 R1in136 (SRR14708226)
  19. 0.387 Cherry Blossom (RSP11318)
  20. 0.386 Feral (RSP10891)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.383 RKM-2018-034 (RSP11126)
  2. 0.382 Feral (RSP10890)
  3. 0.380 Kush Hemp E1 (RSP11128)
  4. 0.379 Carmagnola (RSP11037)
  5. 0.368 Skywalker OG (RSP10837)
  6. 0.365 Santhica27 (RSP11047)
  7. 0.365 Cbot-2019-005 (RSP11133)
  8. 0.363 Monoica (RSP10241)
  9. 0.363 RKM-2018-026 (RSP11118)
  10. 0.354 Futura 75 (RSP10664)
  11. 0.349 The Gift (RSP10988)
  12. 0.349 Ivory (RSP10668)
  13. 0.348 Carmagnola (RSP10979)
  14. 0.345 Fedora 17 (RSP10661)
  15. 0.344 JL yellow (RSP11075)
  16. 0.343 RKM-2018-002 (RSP11093)
  17. 0.342 Kyrgyz Gold (RSP11054)
  18. 0.338 Jiangji (RSP10653)
  19. 0.337 Tisza (RSP11044)
  20. 0.333 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349002
Overlapping SNPs:
89
Concordance:
84

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495298
Overlapping SNPs:
13
Concordance:
13

Blockchain Registration Information

Transaction ID
dd6df4065ca44f7ffeb0d8084fd517cf645b84abbc30e4e4300e27a75518fae9
Stamping Certificate
Download PDF (839.3 KB)
SHASUM Hash
0b6239dcb4bd16af35baf462ae5334b1c7b0ddfa6c18706a9c674c148f1168a9
QR code for RSP11117

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