RKM-2018-026
RSP 11118
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
aPT4 |
c.515+41_519 |
p.Ile173fs | frameshift variant & splice acceptor variant & splice region variant & intron variant | high | contig121 | 2830750 |
CTATAATATTGA |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.139 Skywalker OG (RSP10837)
- 0.141 SFVxTK (RSP11072)
- 0.146 Rugburn OG (RSP11353)
- 0.157 Red Eye OG (RSP11190)
- 0.164 RKM-2018-013 (RSP11104)
- 0.178 Garlic (RSP11341)
- 0.194 RKM-2018-012 (RSP11103)
- 0.197 Gorilla Cookies (RSP11231)
- 0.198 501st OG (RSP11241)
- 0.198 Pie Hoe (RSP11073)
- 0.203 Hermaphrodite ResearchSample2 (RSP11050)
- 0.204 Blueberry Cheesecake (RSP10680)
- 0.205 RKM-2018-034 (RSP11126)
- 0.209 Star Dawg (RSP11352)
- 0.213 RKM-2018-008 (RSP11099)
- 0.219 Sunday Driver (RSP11071)
- 0.221 Grape Stomper (RSP11180)
- 0.223 The Gift (RSP10988)
- 0.226 NSPM1 (RSP11362)
- 0.228 Hermaphrodite ResearchSample2 (RSP11043)
Nearest genetic relatives (Base Tree)
- 0.141 Skywalker OG (RSP10837)
- 0.203 Pie Hoe (RSP11073)
- 0.207 Hermaphrodite ResearchSample2 (RSP11050)
- 0.208 RKM-2018-034 (RSP11126)
- 0.210 Blueberry Cheesecake (RSP10680)
- 0.217 The Gift (RSP10988)
- 0.231 RKM-2018-033 (RSP11125)
- 0.235 RKM-2018-032 (RSP11124)
- 0.239 RKM-2018-020 (RSP11112)
- 0.249 RKM-2018-005 (RSP11096)
- 0.252 RKM-2018-002 (RSP11093)
- 0.262 Kimbo Slice (RSP10997)
- 0.267 RKM-2018-009 (RSP11100)
- 0.276 Kush Hemp E1 (RSP11128)
- 0.289 Sour Raspberry (RSP10551)
- 0.291 Blueberry Cheesecake (RSP10684)
- 0.308 RKM-2018-029 (RSP11121)
- 0.311 Durban Poison (RSP11014)
- 0.312 Gold Cracker (RSP11048)
- 0.312 Kyrgyz Gold (RSP11054)
Most genetically distant strains (All Samples)
- 0.515 Cherry Blossom (RSP11323)
- 0.513 Cherry Blossom (RSP11318)
- 0.488 Unknown- Cherry Wine - 001 (RSP11268)
- 0.483 Cherry Blossom (RSP11274)
- 0.482 Cherry Blossom (RSP11312)
- 0.477 Unknown- Cherry Wine - 002 (RSP11269)
- 0.477 Wife (RSP11148)
- 0.476 Cherry Blossom (RSP11298)
- 0.474 Unknown- Cherry Wine - 003 (RSP11270)
- 0.473 Avidekel (RSP10938)
- 0.472 Cherry Blossom (RSP11301)
- 0.466 Cherry Blossom (RSP11328)
- 0.463 Cherry Blossom (RSP11331)
- 0.462 Cherry Blossom (RSP11327)
- 0.461 Cherry Blossom (RSP11302)
- 0.459 Cherry Blossom (RSP11311)
- 0.459 Cherry Blossom (RSP11315)
- 0.458 Cherry Blossom (RSP11300)
- 0.458 Cherry Blossom (RSP11306)
- 0.457 Cherry Blossom (RSP11310)
Most genetically distant strains (Base Tree)
- 0.428 Cherry (RSP11143)
- 0.393 Cbot-2019-001 (RSP11129)
- 0.386 Cherry (RSP11142)
- 0.383 Cbot-2019-005 (RSP11133)
- 0.379 RKM-2018-023 (RSP11115)
- 0.373 RKM-2018-018 (RSP11110)
- 0.372 UP Sunrise (RSP10989)
- 0.370 Blueberry Cheesecake (RSP10672)
- 0.362 JL yellow (RSP11075)
- 0.359 RKM-2018-028 (RSP11120)
- 0.358 Black Beauty (RSP11035)
- 0.355 Italian Kiss (RSP11034)
- 0.354 RKM-2018-031 (RSP11123)
- 0.353 RKM-2018-006 (RSP11097)
- 0.352 RKM-2018-027 (RSP11119)
- 0.351 Carmagnola (RSP11037)
- 0.351 RKM-2018-022 (RSP11114)
- 0.349 RKM-2018-003 (RSP11094)
- 0.347 Cbot-2019-004 (RSP11132)
- 0.341 CST (RSP11002)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 79
- Concordance:
- 60
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
260e497261b87418
e63b1823c470a65b 918e192f7bd79d95 3a91e78d3e868a18 - Stamping Certificate
- Download PDF (861.7 KB)
- SHASUM Hash
-
c3e901c609b3abec
48cb191b3e6f74b7 a46b49015724dae6 b5bf5453575b223f