RKM-2018-027
RSP 11119
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.030 BLACK JACK (RSP11346)
- 0.033 RKM-2018-025 (RSP11117)
- 0.034 RKM-2018-016 (RSP11108)
- 0.039 Black Jack (RSP10603)
- 0.177 Durban Poison #1 (RSP10996)
- 0.181 Gold Cracker (RSP11048)
- 0.181 Durban Poison #1 (RSP11013)
- 0.182 Durban Poison (RSP10998)
- 0.184 Saint Jack (RSP11179)
- 0.184 Gold Cracker (RSP11041)
- 0.186 Cheese (RSP10460)
- 0.187 Durban Poison (RSP11014)
- 0.199 Durban Poison (RSP11226)
- 0.199 RKM-2018-006 (RSP11097)
- 0.203 Tangerine Haze (RSP10995)
- 0.203 White Label 1 (RSP11336)
- 0.204 Blue Dream (RSP11007)
- 0.209 RKM-2018-011 (RSP11102)
- 0.211 Lemon Skunk (RSP11229)
- 0.217 Italian Kiss (RSP10990)
Nearest genetic relatives (Base Tree)
- 0.178 Durban Poison (RSP11014)
- 0.188 Gold Cracker (RSP11048)
- 0.200 RKM-2018-006 (RSP11097)
- 0.207 UP Sunrise (RSP10989)
- 0.218 RKM-2018-023 (RSP11115)
- 0.224 Italian Kiss (RSP11034)
- 0.229 RKM-2018-003 (RSP11094)
- 0.235 Liberty Haze (RSP11000)
- 0.237 RKM-2018-020 (RSP11112)
- 0.238 Blue Dream (RSP11033)
- 0.243 CST (RSP11002)
- 0.245 Blueberry Cheesecake (RSP10684)
- 0.253 RKM-2018-031 (RSP11123)
- 0.262 Golden Goat 2 (RSP10991)
- 0.270 Skunk#18 (RSP11038)
- 0.271 Hermaphrodite Research Sample1 (RSP11049)
- 0.272 Cbot-2019-004 (RSP11132)
- 0.276 Recon (RSP10755)
- 0.284 RKM-2018-009 (RSP11100)
- 0.284 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.462 Cherry Blossom (RSP11323)
- 0.433 Cherry Blossom (RSP11328)
- 0.427 CS (RSP11208)
- 0.424 Cherry Blossom (RSP11311)
- 0.421 Cherry Blossom (RSP11309)
- 0.420 Feral (RSP11205)
- 0.415 Cherry Blossom (RSP11314)
- 0.414 Cherry Blossom (RSP11317)
- 0.410 Absolute OG (RSP11455)
- 0.409 Cherry Blossom (RSP11298)
- 0.407 Carmaleonte (RSP11207)
- 0.407 Feral (RSP10890)
- 0.406 Feral (RSP11206)
- 0.404 Red Eye OG (RSP11190)
- 0.404 Fatso (RSP11741)
- 0.404 East side OG (RSP12089)
- 0.404 80E (RSP11213)
- 0.402 Unknown--Cherry Wine---001- (RSP11268)
- 0.401 Black Triangle (RSP11638)
- 0.400 Cherry Blossom (RSP11318)
Most genetically distant strains (Base Tree)
- 0.401 Feral (RSP10890)
- 0.395 RKM-2018-034 (RSP11126)
- 0.393 Skywalker OG (RSP10837)
- 0.391 RKM-2018-026 (RSP11118)
- 0.388 Kush Hemp E1 (RSP11128)
- 0.385 Carmagnola (RSP11037)
- 0.382 Santhica27 (RSP11047)
- 0.379 The Gift (RSP10988)
- 0.378 Cbot-2019-005 (RSP11133)
- 0.370 Monoica (RSP10241)
- 0.365 Futura 75 (RSP10664)
- 0.363 Ivory (RSP10668)
- 0.359 RKM-2018-002 (RSP11093)
- 0.354 Fedora 17 (RSP10661)
- 0.354 Kyrgyz Gold (RSP11054)
- 0.351 USO 31 (RSP10981)
- 0.348 Jiangji (RSP10653)
- 0.348 Lovrin (RSP10658)
- 0.348 Tisza (RSP11044)
- 0.346 RKM-2018-019 (RSP11111)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 90
- Concordance:
- 77
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 13
- Concordance:
- 10
Blockchain Registration Information
- Transaction ID
-
986f258a8f212418
d52f38c9b022089b 2a54789174f3af1a 5ca02a8a32479e12 - Stamping Certificate
- Download PDF (858.4 KB)
- SHASUM Hash
-
2f4d9e3f3ff59fc6
529b7fa99f06c500 0159847b8ce40bb1 83f4554db8db29f2