RKM-2018-027
RSP 11119
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.026 BLACK JACK (RSP11346)
- 0.031 RKM-2018-025 (RSP11117)
- 0.031 RKM-2018-016 (RSP11108)
- 0.039 Black Jack (RSP10603)
- 0.168 Gold Cracker (RSP11041)
- 0.177 Durban Poison 1 (RSP10996)
- 0.177 Gold Cracker (RSP11048)
- 0.179 Saint Jack (RSP11179)
- 0.182 Durban Poison 1 (RSP11013)
- 0.183 Durban Poison (RSP10998)
- 0.185 RKM-2018-006 (RSP11097)
- 0.186 Cheese (RSP10460)
- 0.186 Durban Poison (RSP11014)
- 0.192 White Label 1 (RSP11336)
- 0.197 RKM-2018-011 (RSP11102)
- 0.201 Blue Dream (RSP11007)
- 0.202 Tangerine Haze (RSP10995)
- 0.207 Super Blue Dream (RSP11011)
- 0.211 Durban Poison (RSP11226)
- 0.212 OR (RSP10940)
Nearest genetic relatives (Base Tree)
- 0.177 Gold Cracker (RSP11048)
- 0.180 Durban Poison (RSP11014)
- 0.192 RKM-2018-006 (RSP11097)
- 0.213 RKM-2018-023 (RSP11115)
- 0.218 Italian Kiss (RSP11034)
- 0.218 UP Sunrise (RSP10989)
- 0.223 RKM-2018-020 (RSP11112)
- 0.227 RKM-2018-003 (RSP11094)
- 0.228 Blue Dream (RSP11033)
- 0.242 Blueberry Cheesecake (RSP10684)
- 0.244 RKM-2018-031 (RSP11123)
- 0.245 CST (RSP11002)
- 0.252 Liberty Haze (RSP11000)
- 0.254 Golden Goat 2 (RSP10991)
- 0.255 Hermaphrodite Research Sample1 (RSP11049)
- 0.261 Skunk 18 (RSP11038)
- 0.263 RKM-2018-009 (RSP11100)
- 0.268 Recon (RSP10755)
- 0.270 Cbot-2019-004 (RSP11132)
- 0.271 Hermaphrodite ResearchSample2 (RSP11050)
Most genetically distant strains (All Samples)
- 0.474 Cherry Blossom (RSP11323)
- 0.440 Cherry Blossom (RSP11311)
- 0.433 Cherry Blossom (RSP11328)
- 0.429 Unknown- Cherry Wine - 001 (RSP11268)
- 0.423 Cherry Blossom (RSP11318)
- 0.417 Cherry Blossom (RSP11314)
- 0.413 Cherry Blossom (RSP11334)
- 0.408 Cherry Blossom (RSP11335)
- 0.408 Cherry Blossom (RSP11309)
- 0.407 Cherry Blossom (RSP11308)
- 0.404 Cherry Blossom (RSP11298)
- 0.404 Cherry Blossom (RSP11327)
- 0.403 Cherry Blossom (RSP11317)
- 0.402 Unknown- Cherry Wine - 002 (RSP11269)
- 0.402 Cherry Blossom (RSP11274)
- 0.401 Cherry Blossom CBG (RSP11303)
- 0.399 Cherry Blossom (RSP11312)
- 0.398 Feral (RSP11205)
- 0.395 Cherry Blossom (RSP11301)
- 0.394 CS (RSP11208)
Most genetically distant strains (Base Tree)
- 0.386 Cbot-2019-005 (RSP11133)
- 0.374 Feral (RSP10890)
- 0.373 Kush Hemp E1 (RSP11128)
- 0.358 Skywalker OG (RSP10837)
- 0.355 RKM-2018-034 (RSP11126)
- 0.354 Carmagnola (RSP11037)
- 0.353 Santhica27 (RSP11047)
- 0.352 RKM-2018-026 (RSP11118)
- 0.349 Ivory (RSP10668)
- 0.347 Futura 75 (RSP10664)
- 0.344 Monoica (RSP10241)
- 0.342 The Gift (RSP10988)
- 0.341 Tisza (RSP11044)
- 0.336 USO 31 (RSP10981)
- 0.335 RKM-2018-019 (RSP11111)
- 0.334 Cherry (RSP11143)
- 0.334 Tisza (RSP10659)
- 0.333 KYRG-11 (RSP11051)
- 0.333 Lovrin (RSP10658)
- 0.332 RKM-2018-002 (RSP11093)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 90
- Concordance:
- 77
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 13
- Concordance:
- 10
Blockchain Registration Information
- Transaction ID
-
986f258a8f212418
d52f38c9b022089b 2a54789174f3af1a 5ca02a8a32479e12 - Stamping Certificate
- Download PDF (858.4 KB)
- SHASUM Hash
-
2f4d9e3f3ff59fc6
529b7fa99f06c500 0159847b8ce40bb1 83f4554db8db29f2