RKM-2018-031
RSP 11123
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.73A>T | p.Ile25Leu | missense variant | moderate | contig700 | 1951809 | T/A |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
DXR-1 | c.139A>G | p.Arg47Gly | missense variant | moderate | contig380 | 235296 | T/C |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.775delT | p.Tyr259fs | frameshift variant | high | contig121 | 2831380 | AT/A |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.174 Liberty Haze (RSP11000)
- 0.178 Liberty Haze (RSP10946)
- 0.186 Saint Jack (RSP11179)
- 0.203 BLACK JACK (RSP11346)
- 0.206 Erez (RSP10942)
- 0.206 Jacks Cleaner (RSP11347)
- 0.210 Alaska USA (RSP11171)
- 0.212 Black Jack (RSP10603)
- 0.212 RKM-2018-016 (RSP11108)
- 0.212 RKM-2018-025 (RSP11117)
- 0.221 Headcheese (RSP11192)
- 0.223 BlueBerry Cheesecake x JL Male (RSP11201)
- 0.224 Serious Happiness (RSP10763)
- 0.224 Tangerine Haze (RSP10995)
- 0.225 Gold Cracker (RSP11048)
- 0.229 Blueberry Cheesecake (RSP10671)
- 0.232 Blueberry Cheesecake (RSP10670)
- 0.234 Gold Cracker (RSP11041)
- 0.235 Master Kush (RSP11182)
- 0.237 Blueberry Cheesecake (RSP10672)
Nearest genetic relatives (Base Tree)
- 0.179 Liberty Haze (RSP11000)
- 0.227 Gold Cracker (RSP11048)
- 0.244 RKM-2018-027 (RSP11119)
- 0.251 RKM-2018-006 (RSP11097)
- 0.252 CST (RSP11002)
- 0.253 Blueberry Cheesecake (RSP10684)
- 0.253 Blueberry Cheesecake (RSP10672)
- 0.253 Recon (RSP10755)
- 0.256 UP Sunrise (RSP10989)
- 0.260 Durban Poison (RSP11014)
- 0.261 QUEEN JESUS (RSP10105)
- 0.273 RKM-2018-029 (RSP11121)
- 0.277 RKM-2018-022 (RSP11114)
- 0.277 RKM-2018-009 (RSP11100)
- 0.280 Italian Kiss (RSP11034)
- 0.280 Hermaphrodite ResearchSample2 (RSP11050)
- 0.280 Cbot-2019-006 (RSP11134)
- 0.281 RKM-2018-003 (RSP11094)
- 0.284 RKM-2018-023 (RSP11115)
- 0.287 Blue Dream (RSP11033)
Most genetically distant strains (All Samples)
- 0.474 Cherry Blossom (RSP11323)
- 0.464 Unknown- Cherry Wine - 001 (RSP11268)
- 0.442 Cherry Blossom (RSP11311)
- 0.435 Cherry Blossom (RSP11334)
- 0.431 Cherry Blossom (RSP11318)
- 0.417 Cherry Blossom (RSP11308)
- 0.416 Cherry Blossom (RSP11335)
- 0.415 Unknown- Cherry Wine - 002 (RSP11269)
- 0.414 Cherry Blossom (RSP11321)
- 0.409 Cherry Blossom (RSP11328)
- 0.406 Cherry Blossom (RSP11301)
- 0.393 Unknown- Cherry Wine - 004 (RSP11271)
- 0.392 Unknown- Cherry Wine - 003 (RSP11270)
- 0.390 Cherry Blossom (RSP11274)
- 0.388 Cherry Blossom (RSP11314)
- 0.386 Avidekel (RSP10938)
- 0.386 Cherry Blossom CBG (RSP11303)
- 0.385 Cherry Blossom (RSP11298)
- 0.383 Cherry Blossom (RSP11302)
- 0.383 Danny Noonan (RSP11070)
Most genetically distant strains (Base Tree)
- 0.397 Cbot-2019-005 (RSP11133)
- 0.378 Kush Hemp E1 (RSP11128)
- 0.360 RKM-2018-034 (RSP11126)
- 0.354 RKM-2018-026 (RSP11118)
- 0.350 Feral (RSP10890)
- 0.347 Carmagnola (RSP11037)
- 0.341 Cherry (RSP11143)
- 0.340 Skywalker OG (RSP10837)
- 0.340 Carmagnola (RSP10979)
- 0.339 USO 31 (RSP10981)
- 0.339 Ivory (RSP10668)
- 0.335 Santhica27 (RSP11047)
- 0.335 Monoica (RSP10241)
- 0.334 Futura 75 (RSP10664)
- 0.333 Tisza (RSP11044)
- 0.332 Tisza (RSP10659)
- 0.331 Skunk 18 (RSP11038)
- 0.330 Cherry (RSP11142)
- 0.330 JL yellow (RSP11075)
- 0.329 Pie Hoe (RSP11073)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 92
- Concordance:
- 67
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 6
- Concordance:
- 5
Blockchain Registration Information
- Transaction ID
-
793f0d6919099e9d
4262c111ad352bb2 7ca9e65713c020d1 0d13fe38d24e5a61 - Stamping Certificate
- Download PDF (854.6 KB)
- SHASUM Hash
-
d130038984e19209
095387d524e2fc85 efd99ac036bea172 8f579d1ff9d7e6fd