Advanced Strain Search

RKM-2018-031

RSP 11123

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.51%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0415
male female RSP11123

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.73A>T p.Ile25Leu missense variant moderate contig700 1951809

IGV: Start, Jump

T/A
NGS:
0.011
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-1

UniProt

c.139A>G p.Arg47Gly missense variant moderate contig380 235296

IGV: Start, Jump

T/C
NGS:
0.020
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.182 Liberty Haze (RSP11000)
  2. 0.187 Liberty Haze (RSP10946)
  3. 0.190 Saint Jack (RSP11179)
  4. 0.216 Black Jack (RSP10603)
  5. 0.216 BLACK JACK (RSP11346)
  6. 0.219 Jacks Cleaner (RSP11347)
  7. 0.220 Alaska USA (RSP11171)
  8. 0.220 Erez 05MAY2017 (RSP10942)
  9. 0.222 RKM-2018-025 (RSP11117)
  10. 0.222 RKM-2018-016 (RSP11108)
  11. 0.228 BlueBerry Cheesecake x JL Male (RSP11201)
  12. 0.228 Lifter (RSP11365)
  13. 0.230 Headcheese (RSP11192)
  14. 0.231 Blueberry Cheesecake (RSP10671)
  15. 0.232 Tangerine Haze (RSP10995)
  16. 0.235 Blueberry Cheesecake (RSP10670)
  17. 0.236 Gold Cracker (RSP11048)
  18. 0.237 Serious Happiness (RSP10763)
  19. 0.239 Brunswick High (RSP11164)
  20. 0.241 Blueberry Cheesecake (RSP10672)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.170 Liberty Haze (RSP11000)
  2. 0.236 Blueberry Cheesecake (RSP10672)
  3. 0.240 Gold Cracker (RSP11048)
  4. 0.243 CST (RSP11002)
  5. 0.245 UP Sunrise (RSP10989)
  6. 0.250 Durban Poison (RSP11014)
  7. 0.253 RKM-2018-027 (RSP11119)
  8. 0.256 RKM-2018-006 (RSP11097)
  9. 0.256 Blueberry Cheesecake (RSP10684)
  10. 0.262 Queen Jesus (RSP10105)
  11. 0.268 Recon (RSP10755)
  12. 0.277 RKM-2018-003 (RSP11094)
  13. 0.284 Italian Kiss (RSP11034)
  14. 0.287 RKM-2018-028 (RSP11120)
  15. 0.289 RKM-2018-029 (RSP11121)
  16. 0.290 RKM-2018-022 (RSP11114)
  17. 0.293 Cbot-2019-006 (RSP11134)
  18. 0.294 RKM-2018-009 (RSP11100)
  19. 0.297 RKM-2018-023 (RSP11115)
  20. 0.297 RKM-2018-019 (RSP11111)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.441 Cherry Blossom (RSP11323)
  2. 0.429 Cherry Blossom (RSP11311)
  3. 0.427 Unknown--Cherry Wine---001- (RSP11268)
  4. 0.409 Northern Skunk (RSP11456)
  5. 0.403 Absolute OG (RSP11455)
  6. 0.403 Cherry Blossom (RSP11334)
  7. 0.398 Ruderalis Indica (SRR14708267)
  8. 0.398 Cherry Blossom (RSP11328)
  9. 0.394 GG4 (RSP11978)
  10. 0.393 Cherry Blossom (RSP11308)
  11. 0.393 RKM-2018-026 (RSP11118)
  12. 0.393 Red Eye OG (RSP11190)
  13. 0.393 Cherry Lime Runtz (RSP12486)
  14. 0.392 Cherry Blossom (RSP11335)
  15. 0.391 R1in136 (SRR14708226)
  16. 0.391 Danny Noonan (RSP11070)
  17. 0.390 Feral (RSP11205)
  18. 0.389 Cherry Blossom (RSP11321)
  19. 0.389 Cherry Blossom (RSP11301)
  20. 0.388 Cherry Blossom (RSP11318)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.392 RKM-2018-026 (RSP11118)
  2. 0.389 RKM-2018-034 (RSP11126)
  3. 0.386 Kush Hemp E1 (RSP11128)
  4. 0.385 Cbot-2019-005 (RSP11133)
  5. 0.373 Feral (RSP10890)
  6. 0.366 Skywalker OG (RSP10837)
  7. 0.365 Carmagnola (RSP11037)
  8. 0.359 JL yellow (RSP11075)
  9. 0.357 Monoica (RSP10241)
  10. 0.356 RKM-2018-002 (RSP11093)
  11. 0.352 Pie Hoe (RSP11073)
  12. 0.351 Ivory (RSP10668)
  13. 0.351 Fedora 17 (RSP10661)
  14. 0.350 Carmagnola (RSP10979)
  15. 0.346 USO 31 (RSP10981)
  16. 0.343 Skunk#18 (RSP11038)
  17. 0.342 Futura 75 (RSP10664)
  18. 0.341 Santhica27 (RSP11047)
  19. 0.336 Tisza (RSP10659)
  20. 0.334 The Gift (RSP10988)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347130
Overlapping SNPs:
92
Concordance:
67

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495161
Overlapping SNPs:
6
Concordance:
5

Blockchain Registration Information

Transaction ID
793f0d6919099e9d4262c111ad352bb27ca9e65713c020d10d13fe38d24e5a61
Stamping Certificate
Download PDF (854.6 KB)
SHASUM Hash
d130038984e19209095387d524e2fc85efd99ac036bea1728f579d1ff9d7e6fd
QR code for RSP11123

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