Advanced Strain Search

RKM-2018-032

RSP 11124

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

File Downloads

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.55%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0397
male female RSP11124

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.527G>T p.Trp176Leu missense variant moderate contig700 2721146

IGV: Start, Jump

C/A
NGS:
0.033
C90:
0.000
PKSG-4b

UniProt

c.526T>C p.Trp176Arg missense variant moderate contig700 2721147

IGV: Start, Jump

A/G
NGS:
0.037
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.000 RKM-2018-017 (RSP11109)
  2. 0.000 RKM-2018-021 (RSP11113)
  3. 0.151 Pure Power Plant (RSP11265)
  4. 0.157 501st OG (RSP11241)
  5. 0.163 Super Sour Diesel (RSP11191)
  6. 0.164 Gorilla Cookies (RSP11231)
  7. 0.164 RKM-2018-008 (RSP11099)
  8. 0.178 Blueberry Cheesecake (RSP10684)
  9. 0.180 The Gift (RSP10988)
  10. 0.180 East Coast Sour Diesel (RSP10243)
  11. 0.186 Sour D (RSP11343)
  12. 0.191 Rugburn OG (RSP11353)
  13. 0.196 RKM-2018-013 (RSP11104)
  14. 0.196 Power Plant (RSP11223)
  15. 0.196 RKM-2018-002 (RSP11093)
  16. 0.200 Star Dawg (RSP11352)
  17. 0.201 SFVxTK (RSP11072)
  18. 0.202 New York City Deisel (RSP11225)
  19. 0.203 NSPM1 (RSP11362)
  20. 0.205 Skywalker OG (RSP10837)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.173 The Gift (RSP10988)
  2. 0.176 Blueberry Cheesecake (RSP10684)
  3. 0.202 Hermaphrodite ResearchSample2 (RSP11050)
  4. 0.203 RKM-2018-002 (RSP11093)
  5. 0.211 Skywalker OG (RSP10837)
  6. 0.214 Blueberry Cheesecake (RSP10680)
  7. 0.217 Hermaphrodite Research Sample1 (RSP11049)
  8. 0.219 RKM-2018-034 (RSP11126)
  9. 0.224 RKM-2018-009 (RSP11100)
  10. 0.231 RKM-2018-033 (RSP11125)
  11. 0.232 Pie Hoe (RSP11073)
  12. 0.233 RKM-2018-005 (RSP11096)
  13. 0.235 RKM-2018-026 (RSP11118)
  14. 0.246 Gold Cracker (RSP11048)
  15. 0.246 Kimbo Slice (RSP10997)
  16. 0.250 Liberty Haze (RSP11000)
  17. 0.258 RKM-2018-020 (RSP11112)
  18. 0.263 RKM-2018-029 (RSP11121)
  19. 0.267 Golden Goat 2 (RSP10991)
  20. 0.268 Kush Hemp E1 (RSP11128)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.485 Unknown- Cherry Wine - 001 (RSP11268)
  2. 0.462 Cherry Blossom (RSP11311)
  3. 0.452 Cherry Blossom (RSP11318)
  4. 0.451 Unknown- Cherry Wine - 003 (RSP11270)
  5. 0.450 Cherry Blossom (RSP11328)
  6. 0.446 Cherry Blossom (RSP11323)
  7. 0.445 Unknown- Cherry Wine - 002 (RSP11269)
  8. 0.442 Cherry Blossom (RSP11317)
  9. 0.437 Cherry Blossom (RSP11314)
  10. 0.433 JL 3rd Gen Father (RSP11196)
  11. 0.429 Cherry Blossom (RSP11312)
  12. 0.429 Unknown- Cherry Wine - 004 (RSP11271)
  13. 0.429 Cherry Blossom (RSP11334)
  14. 0.428 Cherry Blossom (RSP11309)
  15. 0.427 Cherry Blossom (RSP11301)
  16. 0.424 Cherry Blossom (RSP11308)
  17. 0.423 Cherry Blossom (RSP11274)
  18. 0.423 Cherry Blossom (RSP11335)
  19. 0.422 Cherry Blossom (RSP11298)
  20. 0.420 Cherry Wine (RSP11267)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.395 Cherry (RSP11142)
  2. 0.387 Cbot-2019-005 (RSP11133)
  3. 0.372 Feral (RSP10890)
  4. 0.368 Cherry (RSP11143)
  5. 0.365 Carmagnola (RSP11037)
  6. 0.364 Monoica (RSP10241)
  7. 0.357 Lovrin (RSP10658)
  8. 0.357 Santhica27 (RSP11047)
  9. 0.355 JL yellow (RSP11075)
  10. 0.353 Futura 75 (RSP10664)
  11. 0.352 Ivory (RSP10668)
  12. 0.344 Carmagnola (RSP10979)
  13. 0.344 Jiangji (RSP10653)
  14. 0.342 USO 31 (RSP10981)
  15. 0.341 Cbot-2019-001 (RSP11129)
  16. 0.339 Fedora 17 (RSP10661)
  17. 0.339 Blueberry Cheesecake (RSP10672)
  18. 0.339 Kyrgyz Gold (RSP11054)
  19. 0.338 Black Beauty (RSP11035)
  20. 0.337 Tisza (RSP11044)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8349163
Overlapping SNPs:
94
Concordance:
91

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495160
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
ce2e936dbf78a610f8bfc21b7148538530efdc2570c58df819e3fc2831a8fe2a
Stamping Certificate
Download PDF (859.4 KB)
SHASUM Hash
f87e20a23ab39f6a351a4e5cb68cd72be0eb0df8859d84fba956c656fce0fa4a
QR code for RSP11124

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