RKM-2018-034

RSP 11126

Grower: R-Kiem Seeds

General Information

Accession Date
October 21, 2018
Reported Plant Sex
Male

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.79%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0979
male female RSP11126

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000
THCAS c.749C>A p.Ala250Asp missense variant moderate contig741 4417079

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.632

Variants (Select Genes of Interest)

PKSG-4a

UniProt

c.617A>G p.Tyr206Cys missense variant moderate contig700 1938028

IGV: Start, Jump

A/G
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.626_628delATA p.Asn209del disruptive inframe deletion moderate contig700 1938032

IGV: Start, Jump

CAAT/C
NGS:
0.075
C90:
0.000
PKSG-4a

UniProt

c.1191_1193delTTA p.Tyr398del disruptive inframe deletion moderate contig700 1938600

IGV: Start, Jump

AATT/A
NGS:
0.167
C90:
0.000
PKSG-2a

UniProt

c.1136G>A p.Arg379His missense variant moderate contig700 1944254

IGV: Start, Jump

C/T
NGS:
0.020
C90:
0.000
PKSG-2a

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1944273

IGV: Start, Jump

T/C
NGS:
0.101
C90:
0.967
PKSG-2a

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1944442

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1944445

IGV: Start, Jump

A/C
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1944446

IGV: Start, Jump

C/T
NGS:
0.079
C90:
0.000
PKSG-2a

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1944456

IGV: Start, Jump

G/C
NGS:
0.070
C90:
0.000
PKSG-2a

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1945166

IGV: Start, Jump

T/C
NGS:
0.143
C90:
0.962
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.535_545delATTGGAGTGGG p.Ile179fs frameshift variant high contig700 2721127

IGV: Start, Jump

CCCCACTCCAAT/C
NGS:
0.105
C90:
0.000
PKSG-4b

UniProt

c.523C>T p.His175Tyr missense variant moderate contig700 2721150

IGV: Start, Jump

G/A
NGS:
0.112
C90:
0.325
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.202T>A p.Leu68Ile missense variant moderate contig121 2828858

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
aPT1

UniProt

c.727G>T p.Glu243* stop gained high contig121 2841362

IGV: Start, Jump

G/T
NGS:
0.127
C90:
0.100
aPT1

UniProt

c.864C>G p.Asn288Lys missense variant moderate contig121 2842407

IGV: Start, Jump

C/G
NGS:
0.075
C90:
0.062
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.137 Skywalker OG (RSP10837)
  2. 0.144 SFVxTK (RSP11072)
  3. 0.144 Pure Power Plant (RSP11265)
  4. 0.153 Red Eye OG (RSP11190)
  5. 0.167 Gorilla Cookies (RSP11231)
  6. 0.179 RKM-2018-013 (RSP11104)
  7. 0.184 Rugburn OG (RSP11353)
  8. 0.186 RKM-2018-008 (RSP11099)
  9. 0.189 The Gift (RSP10988)
  10. 0.189 MENDO BREATH (RSP11242)
  11. 0.190 Pie Hoe (RSP11073)
  12. 0.191 Casco Kush (RSP11167)
  13. 0.196 SHERBERT (RSP11355)
  14. 0.200 Sunday Driver (RSP11071)
  15. 0.205 RKM-2018-026 (RSP11118)
  16. 0.207 NSPM1 (RSP11362)
  17. 0.207 JABBA S STASH (RSP11348)
  18. 0.211 501st OG (RSP11241)
  19. 0.217 Garlic (RSP11341)
  20. 0.217 RKM-2018-017 (RSP11109)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.144 Skywalker OG (RSP10837)
  2. 0.183 The Gift (RSP10988)
  3. 0.194 Pie Hoe (RSP11073)
  4. 0.208 RKM-2018-026 (RSP11118)
  5. 0.219 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.219 RKM-2018-032 (RSP11124)
  7. 0.232 Blueberry Cheesecake (RSP10684)
  8. 0.258 Kimbo Slice (RSP10997)
  9. 0.265 RKM-2018-005 (RSP11096)
  10. 0.266 Kush Hemp E1 (RSP11128)
  11. 0.271 RKM-2018-002 (RSP11093)
  12. 0.276 Hermaphrodite Research Sample1 (RSP11049)
  13. 0.284 RKM-2018-020 (RSP11112)
  14. 0.288 RKM-2018-019 (RSP11111)
  15. 0.289 Golden Goat 2 (RSP10991)
  16. 0.292 RKM-2018-033 (RSP11125)
  17. 0.292 Sour Raspberry (RSP10551)
  18. 0.294 Blueberry Cheesecake (RSP10680)
  19. 0.297 Durban Poison (RSP11014)
  20. 0.298 Recon (RSP10755)

Most genetically distant strains (All Samples)

0 0.125 0.250 0.375 0.500
clone distance sibling distance more distant
  1. 0.480 Cherry Blossom (RSP11318)
  2. 0.479 Cherry Blossom (RSP11328)
  3. 0.473 Cherry Blossom (RSP11301)
  4. 0.464 Wife (RSP11148)
  5. 0.464 Cherry Blossom (RSP11300)
  6. 0.454 Cherry Blossom (RSP11309)
  7. 0.452 Cherry Blossom (RSP11306)
  8. 0.449 Cherry Blossom (RSP11325)
  9. 0.448 Cherry Blossom (RSP11323)
  10. 0.444 Unknown- Cherry Wine - 003 (RSP11270)
  11. 0.438 Cherry Blossom (RSP11312)
  12. 0.437 Unknown- Cherry Wine - 001 (RSP11268)
  13. 0.435 Cherry Blossom (RSP11310)
  14. 0.429 Cherry Blossom (RSP11298)
  15. 0.429 Cherry Blossom (RSP11330)
  16. 0.427 Cherry Blossom (RSP11322)
  17. 0.426 AVIDEKEL 2 0 (RSP11174)
  18. 0.423 Cherry Blossom (RSP11319)
  19. 0.419 Cherry Blossom (RSP11314)
  20. 0.418 Cherry Blossom (RSP11332)

Most genetically distant strains (Base Tree)

0 0.100 0.200 0.300 0.400
clone distance sibling distance more distant
  1. 0.388 Cbot-2019-001 (RSP11129)
  2. 0.386 Cherry (RSP11142)
  3. 0.381 Cherry (RSP11143)
  4. 0.379 Cbot-2019-005 (RSP11133)
  5. 0.366 UP Sunrise (RSP10989)
  6. 0.364 Italian Kiss (RSP11034)
  7. 0.360 RKM-2018-031 (RSP11123)
  8. 0.359 RKM-2018-028 (RSP11120)
  9. 0.357 JL yellow (RSP11075)
  10. 0.357 RKM-2018-006 (RSP11097)
  11. 0.355 RKM-2018-027 (RSP11119)
  12. 0.346 Feral (RSP10890)
  13. 0.346 Futura 75 (RSP10664)
  14. 0.345 Lovrin (RSP10658)
  15. 0.344 RKM-2018-023 (RSP11115)
  16. 0.341 Cbot-2019-006 (RSP11134)
  17. 0.340 CST (RSP11002)
  18. 0.339 Monoica (RSP10241)
  19. 0.336 Santhica27 (RSP11047)
  20. 0.335 Carmagnola (RSP10979)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346815
Overlapping SNPs:
95
Concordance:
69

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
ae1c6448c6c3403667a05c8bcd5494dcc08d433ecde8a97ca4f6d49cccfae8ff
Stamping Certificate
Download PDF (860.9 KB)
SHASUM Hash
66696a83b501b0b1bf635011c004d65188493ab5b9eeb33dbda40605fb0549aa
QR code for RSP11126

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