RKM-2018-034
RSP 11126
Grower: R-Kiem Seeds
General Information
- Accession Date
- October 21, 2018
- Reported Plant Sex
- Male
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type I
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
Variants (Select Genes of Interest)
PKSG-4a | c.617A>G | p.Tyr206Cys | missense variant | moderate | contig700 | 1938028 | A/G |
|
PKSG-4a |
c.626_628del |
p.Asn209del | disruptive inframe deletion | moderate | contig700 | 1938032 | CAAT/C |
|
PKSG-4a |
c.1191_1193d |
p.Tyr398del | disruptive inframe deletion | moderate | contig700 | 1938600 | AATT/A |
|
PKSG-2a | c.1136G>A | p.Arg379His | missense variant | moderate | contig700 | 1944254 | C/T |
|
PKSG-2a | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1944273 | T/C | |
PKSG-2a | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1944442 | A/C |
|
PKSG-2a | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1944445 | A/C |
|
PKSG-2a | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1944446 | C/T |
|
PKSG-2a | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1944456 | G/C |
|
PKSG-2a | c.224A>G | p.Lys75Arg | missense variant | moderate | contig700 | 1945166 | T/C | |
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b |
c.535_545del |
p.Ile179fs | frameshift variant | high | contig700 | 2721127 |
CCCCACTCCAAT |
|
PKSG-4b | c.523C>T | p.His175Tyr | missense variant | moderate | contig700 | 2721150 | G/A | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b |
c.353_354ins |
p.Gly119fs | frameshift variant | high | contig700 | 2721319 | T/TGG |
|
DXR-2 | c.1319T>C | p.Ile440Thr | missense variant | moderate | contig380 | 285250 | A/G |
|
aPT4 | c.153A>C | p.Lys51Asn | missense variant | moderate | contig121 | 2828809 | A/C |
|
aPT4 | c.202T>A | p.Leu68Ile | missense variant | moderate | contig121 | 2828858 | T/A |
|
aPT4 |
c.235_236del |
p.Val79fs | frameshift variant | high | contig121 | 2829030 | ATG/A |
|
aPT4 | c.238delT | p.Ser80fs | frameshift variant | high | contig121 | 2829034 | AT/A |
|
aPT4 | c.302A>G | p.Asn101Ser | missense variant | moderate | contig121 | 2829099 | A/G |
|
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.406A>G | p.Ile136Val | missense variant | moderate | contig121 | 2839605 | A/G | |
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
aPT1 | c.727G>T | p.Glu243* | stop gained | high | contig121 | 2841362 | G/T | |
aPT1 | c.864C>G | p.Asn288Lys | missense variant | moderate | contig121 | 2842407 | C/G | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.137 Skywalker OG (RSP10837)
- 0.144 SFVxTK (RSP11072)
- 0.144 Pure Power Plant (RSP11265)
- 0.153 Red Eye OG (RSP11190)
- 0.167 Gorilla Cookies (RSP11231)
- 0.179 RKM-2018-013 (RSP11104)
- 0.184 Rugburn OG (RSP11353)
- 0.186 RKM-2018-008 (RSP11099)
- 0.189 The Gift (RSP10988)
- 0.189 MENDO BREATH (RSP11242)
- 0.190 Pie Hoe (RSP11073)
- 0.191 Casco Kush (RSP11167)
- 0.196 SHERBERT (RSP11355)
- 0.200 Sunday Driver (RSP11071)
- 0.205 RKM-2018-026 (RSP11118)
- 0.207 NSPM1 (RSP11362)
- 0.207 JABBA S STASH (RSP11348)
- 0.211 501st OG (RSP11241)
- 0.217 Garlic (RSP11341)
- 0.217 RKM-2018-017 (RSP11109)
Nearest genetic relatives (Base Tree)
- 0.144 Skywalker OG (RSP10837)
- 0.183 The Gift (RSP10988)
- 0.194 Pie Hoe (RSP11073)
- 0.208 RKM-2018-026 (RSP11118)
- 0.219 Hermaphrodite ResearchSample2 (RSP11050)
- 0.219 RKM-2018-032 (RSP11124)
- 0.232 Blueberry Cheesecake (RSP10684)
- 0.258 Kimbo Slice (RSP10997)
- 0.265 RKM-2018-005 (RSP11096)
- 0.266 Kush Hemp E1 (RSP11128)
- 0.271 RKM-2018-002 (RSP11093)
- 0.276 Hermaphrodite Research Sample1 (RSP11049)
- 0.284 RKM-2018-020 (RSP11112)
- 0.288 RKM-2018-019 (RSP11111)
- 0.289 Golden Goat 2 (RSP10991)
- 0.292 RKM-2018-033 (RSP11125)
- 0.292 Sour Raspberry (RSP10551)
- 0.294 Blueberry Cheesecake (RSP10680)
- 0.297 Durban Poison (RSP11014)
- 0.298 Recon (RSP10755)
Most genetically distant strains (All Samples)
- 0.480 Cherry Blossom (RSP11318)
- 0.479 Cherry Blossom (RSP11328)
- 0.473 Cherry Blossom (RSP11301)
- 0.464 Wife (RSP11148)
- 0.464 Cherry Blossom (RSP11300)
- 0.454 Cherry Blossom (RSP11309)
- 0.452 Cherry Blossom (RSP11306)
- 0.449 Cherry Blossom (RSP11325)
- 0.448 Cherry Blossom (RSP11323)
- 0.444 Unknown- Cherry Wine - 003 (RSP11270)
- 0.438 Cherry Blossom (RSP11312)
- 0.437 Unknown- Cherry Wine - 001 (RSP11268)
- 0.435 Cherry Blossom (RSP11310)
- 0.429 Cherry Blossom (RSP11298)
- 0.429 Cherry Blossom (RSP11330)
- 0.427 Cherry Blossom (RSP11322)
- 0.426 AVIDEKEL 2 0 (RSP11174)
- 0.423 Cherry Blossom (RSP11319)
- 0.419 Cherry Blossom (RSP11314)
- 0.418 Cherry Blossom (RSP11332)
Most genetically distant strains (Base Tree)
- 0.388 Cbot-2019-001 (RSP11129)
- 0.386 Cherry (RSP11142)
- 0.381 Cherry (RSP11143)
- 0.379 Cbot-2019-005 (RSP11133)
- 0.366 UP Sunrise (RSP10989)
- 0.364 Italian Kiss (RSP11034)
- 0.360 RKM-2018-031 (RSP11123)
- 0.359 RKM-2018-028 (RSP11120)
- 0.357 JL yellow (RSP11075)
- 0.357 RKM-2018-006 (RSP11097)
- 0.355 RKM-2018-027 (RSP11119)
- 0.346 Feral (RSP10890)
- 0.346 Futura 75 (RSP10664)
- 0.345 Lovrin (RSP10658)
- 0.344 RKM-2018-023 (RSP11115)
- 0.341 Cbot-2019-006 (RSP11134)
- 0.340 CST (RSP11002)
- 0.339 Monoica (RSP10241)
- 0.336 Santhica27 (RSP11047)
- 0.335 Carmagnola (RSP10979)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 95
- Concordance:
- 69
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
ae1c6448c6c34036
67a05c8bcd5494dc c08d433ecde8a97c a4f6d49cccfae8ff - Stamping Certificate
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- SHASUM Hash
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