Kush Hemp E1

RSP 11128

Grower: Sovereign Fields

General Information

Accession Date
January 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.74%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0409
male female RSP11128

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.197 RKM-2018-008 (RSP11099)
  2. 0.219 The Gift (RSP10988)
  3. 0.235 RKM-2018-012 (RSP11103)
  4. 0.244 LEMONCAKE (RSP11340)
  5. 0.247 Cbot-2019-005 (RSP11133)
  6. 0.253 Pie Hoe (RSP11073)
  7. 0.254 Rugburn OG (RSP11353)
  8. 0.255 RKM-2018-013 (RSP11104)
  9. 0.257 RKM-2018-017 (RSP11109)
  10. 0.261 RKM-2018-032 (RSP11124)
  11. 0.262 RKM-2018-021 (RSP11113)
  12. 0.263 Hermaphrodite ResearchSample2 (RSP11050)
  13. 0.266 Square Wave (RSP11344)
  14. 0.270 Skywalker OG (RSP10837)
  15. 0.271 Hermaphrodite ResearchSample2 (RSP11043)
  16. 0.271 SFVxTK (RSP11072)
  17. 0.271 JABBA S STASH (RSP11348)
  18. 0.277 Sunday Driver (RSP11071)
  19. 0.277 RKM-2018-034 (RSP11126)
  20. 0.279 RKM-2018-026 (RSP11118)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.214 The Gift (RSP10988)
  2. 0.257 Cbot-2019-005 (RSP11133)
  3. 0.259 Pie Hoe (RSP11073)
  4. 0.263 Skywalker OG (RSP10837)
  5. 0.266 RKM-2018-034 (RSP11126)
  6. 0.268 RKM-2018-032 (RSP11124)
  7. 0.273 Hermaphrodite ResearchSample2 (RSP11050)
  8. 0.276 RKM-2018-026 (RSP11118)
  9. 0.296 Blueberry Cheesecake (RSP10684)
  10. 0.300 Cbot-2019-004 (RSP11132)
  11. 0.301 Gold Cracker (RSP11048)
  12. 0.303 Recon (RSP10755)
  13. 0.304 Cbot-2019-006 (RSP11134)
  14. 0.307 RKM-2018-022 (RSP11114)
  15. 0.309 Kimbo Slice (RSP10997)
  16. 0.310 RKM-2018-033 (RSP11125)
  17. 0.312 KYRG-11 (RSP11051)
  18. 0.319 RKM-2018-009 (RSP11100)
  19. 0.320 Skunk 18 (RSP11038)
  20. 0.324 Liberty Haze (RSP11000)

Most genetically distant strains (All Samples)

0 0.142 0.283 0.425 0.567
clone distance sibling distance more distant
  1. 0.537 Cherry Blossom (RSP11318)
  2. 0.537 Cherry Blossom (RSP11328)
  3. 0.489 Cherry Blossom (RSP11323)
  4. 0.485 Unknown- Cherry Wine - 001 (RSP11268)
  5. 0.475 Cherry Blossom (RSP11330)
  6. 0.473 Cherry Blossom (RSP11310)
  7. 0.472 Cherry Blossom (RSP11309)
  8. 0.458 Cherry Blossom (RSP11301)
  9. 0.455 Cherry Blossom (RSP11327)
  10. 0.453 Cherry Blossom (RSP11321)
  11. 0.452 Unknown- Cherry Wine - 003 (RSP11270)
  12. 0.451 Unknown- Cherry Wine - 002 (RSP11269)
  13. 0.449 Cherry Blossom (RSP11312)
  14. 0.448 Alaska (RSP10939)
  15. 0.446 Cherry Blossom (RSP11302)
  16. 0.445 Cherry Blossom (RSP11332)
  17. 0.445 Cherry Blossom (RSP11334)
  18. 0.445 Cherry Blossom (RSP11326)
  19. 0.442 Cherry Blossom (RSP11298)
  20. 0.436 Cherry Blossom (RSP11317)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.409 Cherry (RSP11143)
  2. 0.405 UP Sunrise (RSP10989)
  3. 0.396 JL yellow (RSP11075)
  4. 0.392 Italian Kiss (RSP11034)
  5. 0.390 Carmagnola (RSP11037)
  6. 0.385 Feral (RSP10890)
  7. 0.384 RKM-2018-003 (RSP11094)
  8. 0.380 Blueberry Cheesecake (RSP10672)
  9. 0.379 RKM-2018-023 (RSP11115)
  10. 0.378 RKM-2018-031 (RSP11123)
  11. 0.377 RKM-2018-018 (RSP11110)
  12. 0.377 Cherry (RSP11142)
  13. 0.374 Blue Dream (RSP11033)
  14. 0.373 Carmagnola (RSP10979)
  15. 0.373 RKM-2018-027 (RSP11119)
  16. 0.372 RKM-2018-005 (RSP11096)
  17. 0.368 Cbot-2019-001 (RSP11129)
  18. 0.366 Santhica27 (RSP11047)
  19. 0.364 Futura 75 (RSP10664)
  20. 0.363 Jiangji (RSP10653)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346693
Overlapping SNPs:
113
Concordance:
75

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495250
Overlapping SNPs:
3
Concordance:
3

Blockchain Registration Information

Transaction ID
2c5574a5fe0f243795f255923473a88ebd25a3eb327c88383ed4068fa740754d
Stamping Certificate
Download PDF (854.9 KB)
SHASUM Hash
c0e4593292350db29b252521ed6ab54247c0bc6daf6f92b8cf467c058a77ddc4
QR code for RSP11128

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