Cbot-2019-001
RSP 11129
Grower: Research Development Cannabinoid
General Information
- Accession Date
- February 5, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.492G>C | p.Glu164Asp | missense variant | moderate | contig700 | 2721181 | CTCA/GTCA |
|
PKSG-4b |
c.489_491del |
p.Phe163_Glu |
disruptive inframe deletion | moderate | contig700 | 2721181 | CTCA/C |
|
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
aPT4 | c.1168T>C | p.Tyr390His | missense variant | moderate | contig121 | 2833503 | T/C |
|
aPT1 | c.629C>T | p.Thr210Ile | missense variant | moderate | contig121 | 2840237 | C/T | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.182 AVIDEKEL 2 0 (RSP11174)
- 0.193 Queen Dream CBG (RSP11296)
- 0.194 101st AIRBORN CBD (RSP11350)
- 0.195 Queen Dream (RSP11291)
- 0.197 Queen Dream CBG (RSP11279)
- 0.199 Wife (RSP11148)
- 0.199 Queen Dream CBG (RSP11297)
- 0.200 Hot Blonde (RSP11292)
- 0.201 Queen Dream CBG (RSP11293)
- 0.205 Queen Dream CBG (RSP11285)
- 0.208 UP Sunrise (RSP10989)
- 0.210 Queen Dream CBG (RSP11276)
- 0.212 Queen Dream CBG (RSP11275)
- 0.212 CANNATONIC (RSP11349)
- 0.219 Queen Dream CBG (RSP11283)
- 0.220 Cbot-2019-003 (RSP11131)
- 0.223 Queen Dream CBG (RSP11281)
- 0.224 FL30 (RSP11361)
- 0.225 Hot Blonde (RSP11290)
- 0.229 Liberty Haze (RSP11000)
Nearest genetic relatives (Base Tree)
- 0.224 UP Sunrise (RSP10989)
- 0.235 Liberty Haze (RSP11000)
- 0.252 Cherry (RSP11143)
- 0.284 Durban Poison (RSP11014)
- 0.287 Blueberry Cheesecake (RSP10684)
- 0.294 RKM-2018-031 (RSP11123)
- 0.298 RKM-2018-018 (RSP11110)
- 0.298 Kimbo Slice (RSP10997)
- 0.300 RKM-2018-020 (RSP11112)
- 0.301 Hermaphrodite Research Sample1 (RSP11049)
- 0.302 Italian Kiss (RSP11034)
- 0.303 Blue Dream (RSP11033)
- 0.303 Blueberry Cheesecake (RSP10672)
- 0.306 RKM-2018-028 (RSP11120)
- 0.311 RKM-2018-006 (RSP11097)
- 0.312 RKM-2018-009 (RSP11100)
- 0.314 RKM-2018-027 (RSP11119)
- 0.316 Cbot-2019-006 (RSP11134)
- 0.316 Cbot-2019-004 (RSP11132)
- 0.316 Sour Raspberry (RSP10551)
Most genetically distant strains (All Samples)
- 0.432 80E (RSP11211)
- 0.427 80E (RSP11213)
- 0.426 Star Dawg (RSP11352)
- 0.421 80E (RSP11212)
- 0.421 Cherry Blossom (RSP11334)
- 0.415 Cherry Blossom (RSP11314)
- 0.406 JL 3rd Gen Father (RSP11196)
- 0.405 JABBA S STASH (RSP11348)
- 0.405 Cherry Blossom (RSP11333)
- 0.403 New York City Deisel (RSP11225)
- 0.398 Cherry Blossom (RSP11326)
- 0.397 Red Eye OG (RSP11190)
- 0.397 Power Plant (RSP11223)
- 0.397 Unknown- Cherry Wine - 002 (RSP11269)
- 0.397 Rugburn OG (RSP11353)
- 0.395 RKM-2018-026 (RSP11118)
- 0.395 Arcata Trainwreck (RSP11176)
- 0.393 Carmagnola (RSP11202)
- 0.392 Abacus (RSP11266)
- 0.392 RKM-2018-034 (RSP11126)
Most genetically distant strains (Base Tree)
- 0.393 RKM-2018-026 (RSP11118)
- 0.390 RKM-2018-022 (RSP11114)
- 0.388 RKM-2018-034 (RSP11126)
- 0.388 RKM-2018-019 (RSP11111)
- 0.386 RKM-2018-002 (RSP11093)
- 0.374 Carmagnola (RSP11037)
- 0.372 Skunk 18 (RSP11038)
- 0.371 Feral (RSP10890)
- 0.370 Santhica27 (RSP11047)
- 0.368 Kush Hemp E1 (RSP11128)
- 0.366 Skywalker OG (RSP10837)
- 0.366 Carmagnola (RSP10979)
- 0.365 Tisza (RSP11044)
- 0.361 Monoica (RSP10241)
- 0.355 Hermaphrodite ResearchSample2 (RSP11050)
- 0.355 Cherry (RSP11142)
- 0.355 Kyrgyz Gold (RSP11054)
- 0.353 Cbot-2019-005 (RSP11133)
- 0.351 JL yellow (RSP11075)
- 0.348 Fedora 17 (RSP10661)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 122
- Concordance:
- 100
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 3
- Concordance:
- 3
Blockchain Registration Information
- Transaction ID
-
899d461f0a098ea2
2ce20254a16b2073 e04b1ce434c355be f00708e8ea6fea8a - Stamping Certificate
- Download PDF (862.1 KB)
- SHASUM Hash
-
cd9022391af50374
119bb57964d33267 44b7a83b5d79a239 01e5295d417688e7