Cherry
RSP 11143
Grower: GHA
General Information
- Sample Name
- VR3B
- Accession Date
- April 16, 2019
- Reported Plant Sex
- Female
- Report Type
- StrainSEEK v2 3.2Mb
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type III
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.67T>A | p.Phe23Ile | missense variant | moderate | contig700 | 1945567 | A/T | |
PKSG-2a | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1945603 | T/A | |
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.948T>G | p.Asp316Glu | missense variant | moderate | contig700 | 1950690 | A/C |
|
PKSG-2b | c.945T>G | p.Ser315Arg | missense variant | moderate | contig700 | 1950693 | A/C |
|
PKSG-2b | c.944G>A | p.Ser315Asn | missense variant | moderate | contig700 | 1950694 | C/T |
|
PKSG-2b | c.934C>G | p.His312Asp | missense variant | moderate | contig700 | 1950704 | G/C |
|
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-2b | c.-2_1dupATA | start lost & conservative inframe insertion | high | contig700 | 1951880 | A/ATAT |
|
|
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b | c.419A>G | p.Asp140Gly | missense variant | moderate | contig700 | 2721254 | T/C | |
HDS-2 |
c.82_93delGT |
p.Val28_Thr3 |
conservative inframe deletion | moderate | contig95 | 1989748 |
CGTAACCGGAAC |
|
HDS-2 | c.127T>G | p.Ser43Ala | missense variant | moderate | contig95 | 1989794 | T/G |
|
Nearest genetic relatives (All Samples)
- 0.220 Cherry Wine (RSP11145)
- 0.226 Otto (RSP11147)
- 0.231 Cherry Wine (RSP11305)
- 0.231 2nd Gen Cherry (RSP11141)
- 0.235 Cherry Wine (RSP11307)
- 0.239 FL30 (RSP11361)
- 0.244 Midnight (RSP10941)
- 0.246 Durban Poison 1 (RSP11013)
- 0.250 RAPHAEL 4 (RSP11173)
- 0.250 RINGO S ANGEL (RSP10085)
- 0.253 Cbot-2019-001 (RSP11129)
- 0.254 Queen Dream CBG (RSP11284)
- 0.255 Durban Poison 1 (RSP10996)
- 0.258 RAPHAEL 2 (RSP11172)
- 0.259 BlueBerry Cheesecake x JL Male (RSP11201)
- 0.260 Avidekel (RSP10938)
- 0.261 Queen Dream CBG (RSP11277)
- 0.261 Durban Poison (RSP11014)
- 0.264 Queen Dream (RSP11289)
- 0.265 Queen Dream CBG (RSP11281)
Nearest genetic relatives (Base Tree)
- 0.252 Cbot-2019-001 (RSP11129)
- 0.266 Durban Poison (RSP11014)
- 0.283 Liberty Haze (RSP11000)
- 0.289 Blueberry Cheesecake (RSP10672)
- 0.292 UP Sunrise (RSP10989)
- 0.300 Blueberry Cheesecake (RSP10684)
- 0.303 Cherry (RSP11142)
- 0.313 Recon (RSP10755)
- 0.325 Gold Cracker (RSP11048)
- 0.326 CST (RSP11002)
- 0.326 Cbot-2019-006 (RSP11134)
- 0.327 RKM-2018-003 (RSP11094)
- 0.330 Golden Goat 2 (RSP10991)
- 0.331 RKM-2018-023 (RSP11115)
- 0.331 QUEEN JESUS (RSP10105)
- 0.332 RKM-2018-029 (RSP11121)
- 0.333 Jiangji (RSP10653)
- 0.334 RKM-2018-027 (RSP11119)
- 0.338 Tygra (RSP10667)
- 0.339 Tisza (RSP10659)
Most genetically distant strains (All Samples)
- 0.461 Cherry Blossom (RSP11314)
- 0.429 Cherry Blossom (RSP11333)
- 0.421 RKM-2018-026 (RSP11118)
- 0.418 RKM-2018-012 (RSP11103)
- 0.416 Chem 91 (RSP11185)
- 0.413 JL yellow (RSP11075)
- 0.409 Cherry Blossom (RSP11317)
- 0.404 80E (RSP11213)
- 0.404 Cherry Blossom (RSP11324)
- 0.404 Kush Hemp E1 (RSP11128)
- 0.403 Red Eye OG (RSP11190)
- 0.400 JL 3rd Gen Mother (RSP11197)
- 0.399 JL 3rd Gen Mother (RSP11214)
- 0.398 LEMONCAKE (RSP11340)
- 0.397 Abacus (RSP11266)
- 0.396 Gorilla Cookies (RSP11231)
- 0.395 80E (RSP11211)
- 0.395 80E (RSP11212)
- 0.394 Skywalker OG (RSP10837)
- 0.393 Rugburn OG (RSP11353)
Most genetically distant strains (Base Tree)
- 0.428 RKM-2018-026 (RSP11118)
- 0.414 JL yellow (RSP11075)
- 0.409 Kush Hemp E1 (RSP11128)
- 0.397 Skywalker OG (RSP10837)
- 0.391 RKM-2018-006 (RSP11097)
- 0.388 RKM-2018-022 (RSP11114)
- 0.387 RKM-2018-002 (RSP11093)
- 0.381 RKM-2018-034 (RSP11126)
- 0.380 Cbot-2019-005 (RSP11133)
- 0.376 USO 31 (RSP10981)
- 0.370 Carmagnola (RSP11037)
- 0.368 Carmagnola (RSP10979)
- 0.368 RKM-2018-032 (RSP11124)
- 0.366 RKM-2018-033 (RSP11125)
- 0.366 Skunk 18 (RSP11038)
- 0.366 RKM-2018-019 (RSP11111)
- 0.365 RKM-2018-005 (RSP11096)
- 0.365 Black Beauty (RSP11035)
- 0.365 Pie Hoe (RSP11073)
- 0.364 Santhica27 (RSP11047)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 85
- Concordance:
- 59
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 4
- Concordance:
- 4
Blockchain Registration Information
- Transaction ID
-
62c6ef6ed8d28ab0
e46405c889238443 fc6c8463419ea072 bdf6fb884ba152b3 - Stamping Certificate
- Download PDF (860.9 KB)
- SHASUM Hash
-
9409aefd6f5437db
28158f7a9d77acde 0844025906e85192 1d1d0086c216222d