Cherry

RSP 11143

Grower: GHA

General Information

Sample Name
VR3B
Accession Date
April 16, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.83%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0457
male female RSP11143

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.220 Cherry Wine (RSP11145)
  2. 0.226 Otto (RSP11147)
  3. 0.231 Cherry Wine (RSP11305)
  4. 0.231 2nd Gen Cherry (RSP11141)
  5. 0.235 Cherry Wine (RSP11307)
  6. 0.239 FL30 (RSP11361)
  7. 0.244 Midnight (RSP10941)
  8. 0.246 Durban Poison 1 (RSP11013)
  9. 0.250 RAPHAEL 4 (RSP11173)
  10. 0.250 RINGO S ANGEL (RSP10085)
  11. 0.253 Cbot-2019-001 (RSP11129)
  12. 0.254 Queen Dream CBG (RSP11284)
  13. 0.255 Durban Poison 1 (RSP10996)
  14. 0.258 RAPHAEL 2 (RSP11172)
  15. 0.259 BlueBerry Cheesecake x JL Male (RSP11201)
  16. 0.260 Avidekel (RSP10938)
  17. 0.261 Queen Dream CBG (RSP11277)
  18. 0.261 Durban Poison (RSP11014)
  19. 0.264 Queen Dream (RSP11289)
  20. 0.265 Queen Dream CBG (RSP11281)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.252 Cbot-2019-001 (RSP11129)
  2. 0.266 Durban Poison (RSP11014)
  3. 0.283 Liberty Haze (RSP11000)
  4. 0.289 Blueberry Cheesecake (RSP10672)
  5. 0.292 UP Sunrise (RSP10989)
  6. 0.300 Blueberry Cheesecake (RSP10684)
  7. 0.303 Cherry (RSP11142)
  8. 0.313 Recon (RSP10755)
  9. 0.325 Gold Cracker (RSP11048)
  10. 0.326 CST (RSP11002)
  11. 0.326 Cbot-2019-006 (RSP11134)
  12. 0.327 RKM-2018-003 (RSP11094)
  13. 0.330 Golden Goat 2 (RSP10991)
  14. 0.331 RKM-2018-023 (RSP11115)
  15. 0.331 QUEEN JESUS (RSP10105)
  16. 0.332 RKM-2018-029 (RSP11121)
  17. 0.333 Jiangji (RSP10653)
  18. 0.334 RKM-2018-027 (RSP11119)
  19. 0.338 Tygra (RSP10667)
  20. 0.339 Tisza (RSP10659)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.461 Cherry Blossom (RSP11314)
  2. 0.429 Cherry Blossom (RSP11333)
  3. 0.421 RKM-2018-026 (RSP11118)
  4. 0.418 RKM-2018-012 (RSP11103)
  5. 0.416 Chem 91 (RSP11185)
  6. 0.413 JL yellow (RSP11075)
  7. 0.409 Cherry Blossom (RSP11317)
  8. 0.404 80E (RSP11213)
  9. 0.404 Cherry Blossom (RSP11324)
  10. 0.404 Kush Hemp E1 (RSP11128)
  11. 0.403 Red Eye OG (RSP11190)
  12. 0.400 JL 3rd Gen Mother (RSP11197)
  13. 0.399 JL 3rd Gen Mother (RSP11214)
  14. 0.398 LEMONCAKE (RSP11340)
  15. 0.397 Abacus (RSP11266)
  16. 0.396 Gorilla Cookies (RSP11231)
  17. 0.395 80E (RSP11211)
  18. 0.395 80E (RSP11212)
  19. 0.394 Skywalker OG (RSP10837)
  20. 0.393 Rugburn OG (RSP11353)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.428 RKM-2018-026 (RSP11118)
  2. 0.414 JL yellow (RSP11075)
  3. 0.409 Kush Hemp E1 (RSP11128)
  4. 0.397 Skywalker OG (RSP10837)
  5. 0.391 RKM-2018-006 (RSP11097)
  6. 0.388 RKM-2018-022 (RSP11114)
  7. 0.387 RKM-2018-002 (RSP11093)
  8. 0.381 RKM-2018-034 (RSP11126)
  9. 0.380 Cbot-2019-005 (RSP11133)
  10. 0.376 USO 31 (RSP10981)
  11. 0.370 Carmagnola (RSP11037)
  12. 0.368 Carmagnola (RSP10979)
  13. 0.368 RKM-2018-032 (RSP11124)
  14. 0.366 RKM-2018-033 (RSP11125)
  15. 0.366 Skunk 18 (RSP11038)
  16. 0.366 RKM-2018-019 (RSP11111)
  17. 0.365 RKM-2018-005 (RSP11096)
  18. 0.365 Black Beauty (RSP11035)
  19. 0.365 Pie Hoe (RSP11073)
  20. 0.364 Santhica27 (RSP11047)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346596
Overlapping SNPs:
85
Concordance:
59

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495303
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
62c6ef6ed8d28ab0e46405c889238443fc6c8463419ea072bdf6fb884ba152b3
Stamping Certificate
Download PDF (860.9 KB)
SHASUM Hash
9409aefd6f5437db28158f7a9d77acde0844025906e851921d1d0086c216222d
QR code for RSP11143

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