Cherry Wine

RSP 11145

Grower: PhytaTech

General Information

Accession Date
May 7, 2019
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.49%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0388
male female RSP11145

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.492G>C p.Glu164Asp missense variant moderate contig700 2721181

IGV: Start, Jump

C/G
NGS:
0.048
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.139 Cherry Blossom (RSP11304)
  2. 0.171 Otto (RSP11147)
  3. 0.193 Midnight (RSP10941)
  4. 0.193 Cherry Wine (RSP11305)
  5. 0.194 Cherry Wine (RSP11307)
  6. 0.195 Cherry Blossom (RSP11330)
  7. 0.205 Cherry Blossom (RSP11332)
  8. 0.206 Unknown- Cherry Wine - 005 (RSP11272)
  9. 0.207 Cherry Blossom (RSP11298)
  10. 0.212 2nd Gen Cherry (RSP11141)
  11. 0.216 RAPHAEL 2 (RSP11172)
  12. 0.220 Cherry (RSP11143)
  13. 0.220 Cherry Blossom (RSP11320)
  14. 0.220 Cherry Blossom (RSP11310)
  15. 0.223 Blueberry Cheesecake (RSP10684)
  16. 0.225 Doug s Varin (RSP11243)
  17. 0.228 Cherry Blossom (RSP11299)
  18. 0.236 Domnesia (RSP11184)
  19. 0.237 101st AIRBORN CBD (RSP11350)
  20. 0.238 RAPHAEL 4 (RSP11173)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.226 Cherry (RSP11143)
  2. 0.230 Blueberry Cheesecake (RSP10684)
  3. 0.268 Durban Poison (RSP11014)
  4. 0.274 Cbot-2019-001 (RSP11129)
  5. 0.288 Recon (RSP10755)
  6. 0.288 UP Sunrise (RSP10989)
  7. 0.288 Liberty Haze (RSP11000)
  8. 0.300 CST (RSP11002)
  9. 0.307 Golden Goat 2 (RSP10991)
  10. 0.315 RKM-2018-023 (RSP11115)
  11. 0.316 Tygra (RSP10667)
  12. 0.320 RKM-2018-003 (RSP11094)
  13. 0.321 Italian Kiss (RSP11034)
  14. 0.324 Blueberry Cheesecake (RSP10672)
  15. 0.326 RKM-2018-027 (RSP11119)
  16. 0.326 Gold Cracker (RSP11048)
  17. 0.328 Blue Dream (RSP11033)
  18. 0.329 RKM-2018-029 (RSP11121)
  19. 0.330 Kimbo Slice (RSP10997)
  20. 0.330 Cherry (RSP11142)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.435 RKM-2018-026 (RSP11118)
  2. 0.429 Abacus (RSP11266)
  3. 0.426 Chem 91 (RSP11185)
  4. 0.418 Danny Noonan (RSP11070)
  5. 0.417 RKM-2018-012 (RSP11103)
  6. 0.415 Kush Hemp E1 (RSP11128)
  7. 0.413 Cherry Blossom (RSP11318)
  8. 0.409 Red Eye OG (RSP11190)
  9. 0.403 80E (RSP11212)
  10. 0.401 80E (RSP11213)
  11. 0.400 RKM-2018-002 (RSP11093)
  12. 0.397 JL yellow (RSP11075)
  13. 0.396 Skywalker OG (RSP10837)
  14. 0.396 JL 3rd Gen Father (RSP11196)
  15. 0.396 501st OG (RSP11241)
  16. 0.395 Arcata Trainwreck (RSP11176)
  17. 0.393 White Label 1 (RSP11336)
  18. 0.391 JABBA S STASH (RSP11348)
  19. 0.391 Super Sour Diesel (RSP11191)
  20. 0.390 Brunswick High (RSP11164)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.432 RKM-2018-026 (RSP11118)
  2. 0.415 Kush Hemp E1 (RSP11128)
  3. 0.397 JL yellow (RSP11075)
  4. 0.394 Skywalker OG (RSP10837)
  5. 0.391 RKM-2018-019 (RSP11111)
  6. 0.385 RKM-2018-002 (RSP11093)
  7. 0.383 RKM-2018-006 (RSP11097)
  8. 0.377 RKM-2018-022 (RSP11114)
  9. 0.375 Santhica27 (RSP11047)
  10. 0.375 Carmagnola (RSP11037)
  11. 0.375 USO 31 (RSP10981)
  12. 0.373 RKM-2018-032 (RSP11124)
  13. 0.372 Ivory (RSP10668)
  14. 0.372 RKM-2018-034 (RSP11126)
  15. 0.371 RKM-2018-009 (RSP11100)
  16. 0.371 Fedora 17 (RSP10661)
  17. 0.369 Feral (RSP10890)
  18. 0.369 The Gift (RSP10988)
  19. 0.368 Cbot-2019-005 (RSP11133)
  20. 0.367 Lovrin (RSP10658)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8347252
Overlapping SNPs:
124
Concordance:
112

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495222
Overlapping SNPs:
14
Concordance:
12

Blockchain Registration Information

Transaction ID
b583e85a0cf301eb54be40322ff1e27e62948a64097bc4b807fda315137b25b3
Stamping Certificate
Download PDF (853.4 KB)
SHASUM Hash
2ad4126892be08d2099ae08696e4618376b964ccb0bde01b89a00e53cde1d463
QR code for RSP11145

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