North Traveler

RSP 11166

Grower: Elevation Science

General Information

Sample Name
NT-H1
Accession Date
June 18, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.47%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0382
male female RSP11166

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.353_354insCC p.Gly119fs frameshift variant high contig700 2721319

IGV: Start, Jump

T/TGG
NGS:
0.175
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
aPT4

UniProt

c.16G>A p.Val6Ile missense variant moderate contig121 2828672

IGV: Start, Jump

G/A
NGS:
0.158
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.153A>C p.Lys51Asn missense variant moderate contig121 2828809

IGV: Start, Jump

A/C
NGS:
0.375
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.222 Electra (RSP11366)
  2. 0.237 North Traveler (RSP11168)
  3. 0.237 Domnesia (RSP11184)
  4. 0.240 Durban Poison #1 (RSP11013)
  5. 0.241 Serious Happiness (RSP10763)
  6. 0.242 Doug s Varin (RSP11243)
  7. 0.243 North Traveler (RSP11163)
  8. 0.249 Lift (RSP11378)
  9. 0.251 Joy (RSP11380)
  10. 0.252 Badger (RSP11614)
  11. 0.253 Banana Kush (RSP11739)
  12. 0.253 Black 84 (RSP11188)
  13. 0.254 Big Skunk (SRR14708269)
  14. 0.256 Cheese (RSP10460)
  15. 0.256 Durban Poison #1 (RSP10996)
  16. 0.258 Trump x Trump (RSP11466)
  17. 0.259 Suver Haze (RSP11364)
  18. 0.259 Liberty Haze (RSP11000)
  19. 0.259 RKM-2018-007 (RSP11098)
  20. 0.260 Blueberry Cheesecake (RSP10684)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.263 Blueberry Cheesecake (RSP10684)
  2. 0.264 RKM-2018-019 (RSP11111)
  3. 0.269 Liberty Haze (RSP11000)
  4. 0.271 RKM-2018-003 (RSP11094)
  5. 0.274 Hermaphrodite ResearchSample2 (RSP11050)
  6. 0.278 RKM-2018-009 (RSP11100)
  7. 0.279 UP Sunrise (RSP10989)
  8. 0.283 RKM-2018-004 (RSP11096)
  9. 0.287 RKM-2018-020 (RSP11112)
  10. 0.289 Durban Poison (RSP11014)
  11. 0.291 RKM-2018-031 (RSP11123)
  12. 0.294 Cbot-2019-006 (RSP11134)
  13. 0.295 Jiangji (RSP10653)
  14. 0.297 Queen Jesus (RSP10105)
  15. 0.303 Blueberry Cheesecake (RSP10672)
  16. 0.303 Blueberry Cheesecake (RSP10680)
  17. 0.309 Cbot-2019-004 (RSP11132)
  18. 0.309 Tisza (RSP11044)
  19. 0.309 RKM-2018-029 (RSP11121)
  20. 0.312 Sour Raspberry (RSP10551)

Most genetically distant strains (All Samples)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.412 Cherry Blossom (RSP11317)
  2. 0.409 Cherry Blossom (RSP11306)
  3. 0.407 Cherry Blossom (RSP11324)
  4. 0.402 Red Eye OG (RSP11190)
  5. 0.401 Cherry Blossom (RSP11318)
  6. 0.397 Cherry Blossom (RSP11301)
  7. 0.396 Kush Hemp E1 (RSP11128)
  8. 0.396 GG4 (RSP11978)
  9. 0.395 Juicy Gummy x Royal Kush (RSP12484)
  10. 0.394 Cherry Blossom (RSP11322)
  11. 0.394 Cherry Blossom (RSP11329)
  12. 0.393 RKM-2018-012 (RSP11103)
  13. 0.393 CS Indica (RSP11658)
  14. 0.392 East side OG (RSP12089)
  15. 0.392 Skywalker OG (RSP10837)
  16. 0.391 80E (RSP11213)
  17. 0.391 Cherry Blossom (RSP11325)
  18. 0.390 BagSeed (RSP12627)
  19. 0.390 Cherry Blossom (RSP11333)
  20. 0.390 Northern Skunk (RSP11456)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.414 Kush Hemp E1 (RSP11128)
  2. 0.399 Skywalker OG (RSP10837)
  3. 0.389 JL yellow (RSP11075)
  4. 0.371 Cbot-2019-001 (RSP11129)
  5. 0.369 USO 31 (RSP10981)
  6. 0.367 RKM-2018-026 (RSP11118)
  7. 0.366 Cbot-2019-005 (RSP11133)
  8. 0.366 The Gift (RSP10988)
  9. 0.364 RKM-2018-002 (RSP11093)
  10. 0.359 Cherry (RSP11142)
  11. 0.355 RKM-2018-034 (RSP11126)
  12. 0.354 Feral (RSP10890)
  13. 0.347 Pie Hoe (RSP11073)
  14. 0.344 Ivory (RSP10668)
  15. 0.343 Fedora 17 (RSP10661)
  16. 0.341 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.341 Monoica (RSP10241)
  18. 0.341 RKM-2018-006 (RSP11097)
  19. 0.340 Lovrin (RSP10658)
  20. 0.338 Carmagnola (RSP11037)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448448
Overlapping SNPs:
94
Concordance:
54

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495209
Overlapping SNPs:
4
Concordance:
3

Blockchain Registration Information

Transaction ID
363141ae9d77a7b4f9d0bfbd1608c1b61b08d4ca5fc02df2888b3575352213a4
Stamping Certificate
Download PDF (847.0 KB)
SHASUM Hash
c709828422fa280b94e2fd68dab5254a56ca81145eae1b153f4b5373eed71e07
QR code for RSP11166

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