North Traveler

RSP 11168

Grower: Elevation Science

General Information

Sample Name
NT-Early
Accession Date
June 18, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.3%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0378
male female RSP11168

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

Gene HGVS.c HGVS.p Annotation Annotation Impact Contig Contig Pos Ref/Alt Var Freq
THCAS c.998C>G p.Pro333Arg missense variant moderate contig741 4416830

IGV: Start, Jump

G/C
NGS:
0.182
C90:
0.000

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.774G>A p.Met258Ile missense variant moderate contig700 1950864

IGV: Start, Jump

C/T
NGS:
0.366
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
FAD2-2

UniProt

c.161T>A p.Leu54His missense variant moderate contig83 1803208

IGV: Start, Jump

A/T
NGS:
0.156
C90:
0.000
FAD2-2

UniProt

c.154G>A p.Val52Ile missense variant moderate contig83 1803215

IGV: Start, Jump

C/T
NGS:
0.022
C90:
0.000
FAD2-2

UniProt

c.62C>T p.Pro21Leu missense variant moderate contig83 1803307

IGV: Start, Jump

G/A
NGS:
0.042
C90:
0.000
aPT4

UniProt

c.235_236delGT p.Val79fs frameshift variant high contig121 2829030

IGV: Start, Jump

ATG/A
NGS:
0.417
C90:
0.000
aPT4

UniProt

c.238delT p.Ser80fs frameshift variant high contig121 2829034

IGV: Start, Jump

AT/A
NGS:
0.421
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.067 0.133 0.200 0.267
clone distance sibling distance more distant
  1. 0.214 Blue Dream (RSP11009)
  2. 0.217 RKM-2018-011 (RSP11102)
  3. 0.220 UP Sunrise (RSP10989)
  4. 0.225 Doug s Varin (RSP11243)
  5. 0.225 Blue Dream (RSP11017)
  6. 0.226 Jacks Cleaner (RSP11347)
  7. 0.227 Blue Dream (RSP11010)
  8. 0.228 RKM-2018-006 (RSP11097)
  9. 0.229 Blue Dream (RSP11007)
  10. 0.229 EREZ USA (RSP11170)
  11. 0.230 JL X NSPM1 12 (RSP11472)
  12. 0.231 Serious Happiness (RSP10763)
  13. 0.233 Master Kush (RSP11497)
  14. 0.237 North Traveler (RSP11166)
  15. 0.237 Blue Dream (RSP11004)
  16. 0.238 Blue Dream (RSP11012)
  17. 0.238 Saint Jack (RSP11179)
  18. 0.238 Blue Dream (RSP11006)
  19. 0.238 Electra (RSP11366)
  20. 0.240 Tangerine Haze (RSP10995)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.209 UP Sunrise (RSP10989)
  2. 0.234 RKM-2018-006 (RSP11097)
  3. 0.255 RKM-2018-031 (RSP11123)
  4. 0.260 Blue Dream (RSP11033)
  5. 0.265 Liberty Haze (RSP11000)
  6. 0.267 Queen Jesus (RSP10105)
  7. 0.273 Sour Raspberry (RSP10551)
  8. 0.278 Durban Poison (RSP11014)
  9. 0.278 Italian Kiss (RSP11034)
  10. 0.280 RKM-2018-009 (RSP11100)
  11. 0.283 RKM-2018-003 (RSP11094)
  12. 0.285 RKM-2018-028 (RSP11120)
  13. 0.288 RKM-2018-020 (RSP11112)
  14. 0.290 Recon (RSP10755)
  15. 0.293 RKM-2018-018 (RSP11110)
  16. 0.293 RKM-2018-027 (RSP11119)
  17. 0.294 CST (RSP11002)
  18. 0.294 Cbot-2019-001 (RSP11129)
  19. 0.297 Blueberry Cheesecake (RSP10672)
  20. 0.298 Tygra (RSP10667)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.449 80E (RSP11213)
  2. 0.440 GMO x Garlic Breath (RSP12507)
  3. 0.436 Fatso (RSP11741)
  4. 0.436 GMO x Zkittlez #43 (RSP11976)
  5. 0.432 Cherry Blossom (RSP11298)
  6. 0.429 CHEM4 (RSP12090)
  7. 0.428 Right Mark (RSP11628)
  8. 0.427 Peanut Butter Breath (RSP11640)
  9. 0.427 80E (RSP11211)
  10. 0.426 BagSeed (RSP12627)
  11. 0.423 Red Eye OG (RSP11190)
  12. 0.422 80E (RSP11212)
  13. 0.420 Kush Hemp E1 (RSP11128)
  14. 0.420 GG4 (RSP11978)
  15. 0.418 Candy Kush (RSP11492)
  16. 0.417 RKM-2018-012 (RSP11103)
  17. 0.414 Cherry Blossom (RSP11334)
  18. 0.413 Cherry Blossom (RSP11317)
  19. 0.413 Cherry Lime Runtz (RSP12486)
  20. 0.412 RKM-2018-002 (RSP11093)

Most genetically distant strains (Base Tree)

0 0.108 0.217 0.325 0.433
clone distance sibling distance more distant
  1. 0.427 Kush Hemp E1 (RSP11128)
  2. 0.423 RKM-2018-002 (RSP11093)
  3. 0.422 RKM-2018-026 (RSP11118)
  4. 0.401 Skywalker OG (RSP10837)
  5. 0.386 Pie Hoe (RSP11073)
  6. 0.377 Cbot-2019-005 (RSP11133)
  7. 0.373 RKM-2018-034 (RSP11126)
  8. 0.368 Monoica (RSP10241)
  9. 0.361 RKM-2018-032 (RSP11124)
  10. 0.359 Kyrgyz Gold (RSP11054)
  11. 0.356 Feral (RSP10890)
  12. 0.355 USO 31 (RSP10981)
  13. 0.354 Cherry (RSP11142)
  14. 0.353 Santhica27 (RSP11047)
  15. 0.350 Blueberry Cheesecake (RSP10680)
  16. 0.344 Lovrin (RSP10658)
  17. 0.343 Jiangji (RSP10653)
  18. 0.343 Futura 75 (RSP10664)
  19. 0.341 Cherry (RSP11143)
  20. 0.341 Hermaphrodite ResearchSample2 (RSP11050)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346495
Overlapping SNPs:
97
Concordance:
63

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495209
Overlapping SNPs:
4
Concordance:
4

Blockchain Registration Information

Transaction ID
aabf9432e6a903eeebe825b043d29f204b1045d2f03699e496d0a2d369bfe0d0
Stamping Certificate
Download PDF (859.2 KB)
SHASUM Hash
bcf079aff59f3f3b7150891245b7fe3175a0a658bde479e064a730a9284a916b
QR code for RSP11168

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