AVIDEKEL USA

RSP 11169

Grower: TIkun Olam

General Information

Sample Name
AVI High Test
Accession Date
June 24, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type III

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.52%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0448
male female RSP11169

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1delATA p.Met1del start lost & conservative inframe deletion high contig700 1951880

IGV: Start, Jump

ATAT/A
NGS:
0.009
C90:
0.000
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.419A>G p.Asp140Gly missense variant moderate contig700 2721254

IGV: Start, Jump

T/C
NGS:
0.430
C90:
0.440
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
DXR-1

UniProt

c.20G>T p.Cys7Phe missense variant moderate contig380 235947

IGV: Start, Jump

C/A
NGS:
0.020
C90:
0.000
DXR-2

UniProt

c.1319T>C p.Ile440Thr missense variant moderate contig380 285250

IGV: Start, Jump

A/G
NGS:
0.480
C90:
0.000
DXR-2

UniProt

c.1140A>C p.Lys380Asn missense variant moderate contig380 285582

IGV: Start, Jump

T/G
NGS:
0.018
C90:
0.000
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.154 RAPHAEL 2 (RSP11172)
  2. 0.200 Avidekel (RSP10938)
  3. 0.223 Midnight (RSP10941)
  4. 0.226 Cbot-2019-003 (RSP11131)
  5. 0.229 RAPHAEL 4 (RSP11173)
  6. 0.233 Cbot-2019-002 (RSP11130)
  7. 0.244 Cherry Wine (RSP11145)
  8. 0.254 Sour Tsunami (RSP11187)
  9. 0.255 Cherry Wine (RSP11305)
  10. 0.255 Durban Poison 1 (RSP11013)
  11. 0.258 Cherry Wine (RSP11307)
  12. 0.261 CST (RSP11002)
  13. 0.261 Wife (RSP11148)
  14. 0.264 Durban Poison 1 (RSP10996)
  15. 0.268 Unknown- Cherry Wine - 003 (RSP11270)
  16. 0.271 Doug s Varin (RSP11243)
  17. 0.272 Domnesia (RSP11184)
  18. 0.273 Cherry (RSP11143)
  19. 0.275 101st AIRBORN CBD (RSP11350)
  20. 0.279 Cherry Blossom (RSP11298)

Nearest genetic relatives (Base Tree)

0 0.092 0.183 0.275 0.367
clone distance sibling distance more distant
  1. 0.278 CST (RSP11002)
  2. 0.280 Cherry (RSP11143)
  3. 0.285 Blueberry Cheesecake (RSP10684)
  4. 0.294 Cbot-2019-001 (RSP11129)
  5. 0.296 Cbot-2019-004 (RSP11132)
  6. 0.300 Durban Poison (RSP11014)
  7. 0.308 Liberty Haze (RSP11000)
  8. 0.330 Recon (RSP10755)
  9. 0.330 UP Sunrise (RSP10989)
  10. 0.333 Cbot-2019-005 (RSP11133)
  11. 0.335 RKM-2018-027 (RSP11119)
  12. 0.335 RKM-2018-020 (RSP11112)
  13. 0.335 Blueberry Cheesecake (RSP10672)
  14. 0.336 Tygra (RSP10667)
  15. 0.336 Gold Cracker (RSP11048)
  16. 0.341 RKM-2018-003 (RSP11094)
  17. 0.345 Italian Kiss (RSP11034)
  18. 0.348 Hermaphrodite ResearchSample2 (RSP11050)
  19. 0.353 Tisza (RSP10659)
  20. 0.354 QUEEN JESUS (RSP10105)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.463 Cherry Blossom (RSP11318)
  2. 0.447 Cherry Blossom (RSP11324)
  3. 0.443 Cherry Blossom (RSP11333)
  4. 0.438 Cherry Blossom (RSP11326)
  5. 0.431 RKM-2018-019 (RSP11111)
  6. 0.430 UP Wendigo (RSP11261)
  7. 0.429 RKM-2018-026 (RSP11118)
  8. 0.424 Cherry Blossom (RSP11302)
  9. 0.424 80E (RSP11211)
  10. 0.423 80E (RSP11213)
  11. 0.421 Glueberry OG (RSP11222)
  12. 0.418 RKM-2018-001 (RSP11092)
  13. 0.417 Cherry Blossom (RSP11317)
  14. 0.417 CS (RSP11208)
  15. 0.416 JABBA S STASH (RSP11348)
  16. 0.416 Chem 91 (RSP11185)
  17. 0.415 Square Wave (RSP11344)
  18. 0.415 80E (RSP11212)
  19. 0.414 New York City Deisel (RSP11225)
  20. 0.414 North Traveler (RSP11163)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.441 RKM-2018-019 (RSP11111)
  2. 0.432 RKM-2018-026 (RSP11118)
  3. 0.422 RKM-2018-022 (RSP11114)
  4. 0.410 RKM-2018-018 (RSP11110)
  5. 0.400 JL yellow (RSP11075)
  6. 0.397 Kush Hemp E1 (RSP11128)
  7. 0.395 Sour Raspberry (RSP10551)
  8. 0.395 Black Beauty (RSP11035)
  9. 0.393 Carmagnola (RSP11037)
  10. 0.393 The Gift (RSP10988)
  11. 0.392 RKM-2018-034 (RSP11126)
  12. 0.392 RKM-2018-032 (RSP11124)
  13. 0.392 RKM-2018-028 (RSP11120)
  14. 0.387 Santhica27 (RSP11047)
  15. 0.385 Hermaphrodite Research Sample1 (RSP11049)
  16. 0.382 Skywalker OG (RSP10837)
  17. 0.381 RKM-2018-002 (RSP11093)
  18. 0.379 KYRG-11 (RSP11051)
  19. 0.378 RKM-2018-006 (RSP11097)
  20. 0.378 RKM-2018-029 (RSP11121)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR8346396
Overlapping SNPs:
98
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495276
Overlapping SNPs:
13
Concordance:
12

Blockchain Registration Information

Transaction ID
ffc905b0f1cbeabe6f98dfa015a5309b5000c4657752237a2c4292969344b6c2
Stamping Certificate
Download PDF (850.8 KB)
SHASUM Hash
4a64dfefe027d8eb44a41b43c0bbed2d2bea95a550ac7efbea53e863a4c7fdfd
QR code for RSP11169

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