EREZ USA

RSP 11170

Grower: TIkun Olam

General Information

Accession Date
June 24, 2019
Reported Plant Sex
Female

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Uncommon
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type I

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 1.39%
Least Heterozygous Most Heterozygous

The ratio of reads mapped to Y-contigs to reads mapped to the whole Cannabis genome (Y-ratios) has been demonstrated to be strongly correlated with plant sex typing. This plot shows the distribution of Y-ratios for all samples in our database which were sequenced with the same method (panel or WGS) as this sample and where this sample falls in the distribution.

Y-Ratio Distribution: 0.0436
male female RSP11170

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.948T>G p.Asp316Glu missense variant moderate contig700 1950690

IGV: Start, Jump

A/C
NGS:
0.456
C90:
0.000
PKSG-2b

UniProt

c.945T>G p.Ser315Arg missense variant moderate contig700 1950693

IGV: Start, Jump

A/C
NGS:
0.454
C90:
0.000
PKSG-2b

UniProt

c.944G>A p.Ser315Asn missense variant moderate contig700 1950694

IGV: Start, Jump

C/T
NGS:
0.445
C90:
0.000
PKSG-2b

UniProt

c.934C>G p.His312Asp missense variant moderate contig700 1950704

IGV: Start, Jump

G/C
NGS:
0.410
C90:
0.000
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-2b

UniProt

c.-2_1dupATA start lost & conservative inframe insertion high contig700 1951880

IGV: Start, Jump

A/ATAT
NGS:
0.410
C90:
0.000
aPT4

UniProt

c.97T>C p.Tyr33His missense variant moderate contig121 2828753

IGV: Start, Jump

T/C
NGS:
0.439
C90:
0.000
aPT4

UniProt

c.302A>G p.Asn101Ser missense variant moderate contig121 2829099

IGV: Start, Jump

A/G
NGS:
0.349
C90:
0.000
aPT4

UniProt

c.775delT p.Tyr259fs frameshift variant high contig121 2831380

IGV: Start, Jump

AT/A
NGS:
0.224
C90:
0.000
aPT4

UniProt

c.1168T>C p.Tyr390His missense variant moderate contig121 2833503

IGV: Start, Jump

T/C
NGS:
0.546
C90:
0.000
aPT1

UniProt

c.406A>G p.Ile136Val missense variant moderate contig121 2839605

IGV: Start, Jump

A/G
NGS:
0.579
C90:
0.761
aPT1

UniProt

c.629C>T p.Thr210Ile missense variant moderate contig121 2840237

IGV: Start, Jump

C/T
NGS:
0.561
C90:
0.598
HDS-2

UniProt

c.82_93delGTAACCGGAACT p.Val28_Thr31del conservative inframe deletion moderate contig95 1989748

IGV: Start, Jump

CGTAACCGGAACT/C
NGS:
0.805
C90:
0.000
HDS-2

UniProt

c.127T>G p.Ser43Ala missense variant moderate contig95 1989794

IGV: Start, Jump

T/G
NGS:
0.721
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.058 0.117 0.175 0.233
clone distance sibling distance more distant
  1. 0.167 Alaska 05MAY2017 (RSP10939)
  2. 0.187 UP Sunrise (RSP10989)
  3. 0.187 Blue Dream (RSP11010)
  4. 0.188 Blue Dream (RSP11004)
  5. 0.191 Blue Dream (RSP11017)
  6. 0.202 Blue Dream (RSP11007)
  7. 0.206 Serious Happiness (RSP10763)
  8. 0.208 Blue Dream (RSP11006)
  9. 0.208 UP Green Flash (RSP11259)
  10. 0.209 Doug s Varin (RSP11243)
  11. 0.210 Blue Dream (RSP11009)
  12. 0.213 Electra (RSP11366)
  13. 0.214 Black Jack (RSP10603)
  14. 0.216 Super Blue Dream (RSP11011)
  15. 0.217 Blue Dream (RSP11012)
  16. 0.217 Colombian 8 (SRR14708214)
  17. 0.218 RKM-2018-025 (RSP11117)
  18. 0.220 Tangerine Haze (RSP10995)
  19. 0.222 RKM-2018-016 (RSP11108)
  20. 0.223 WO DC (RSP11413)

Nearest genetic relatives (Base Tree)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.181 UP Sunrise (RSP10989)
  2. 0.235 Italian Kiss (RSP11034)
  3. 0.242 Liberty Haze (RSP11000)
  4. 0.243 RKM-2018-003 (RSP11094)
  5. 0.246 RKM-2018-027 (RSP11119)
  6. 0.247 RKM-2018-023 (RSP11115)
  7. 0.247 Blue Dream (RSP11033)
  8. 0.256 Gold Cracker (RSP11048)
  9. 0.259 Blueberry Cheesecake (RSP10684)
  10. 0.259 RKM-2018-020 (RSP11112)
  11. 0.263 Durban Poison (RSP11014)
  12. 0.265 Cbot-2019-001 (RSP11129)
  13. 0.267 Hermaphrodite Research Sample1 (RSP11049)
  14. 0.272 RKM-2018-018 (RSP11110)
  15. 0.276 RKM-2018-009 (RSP11100)
  16. 0.283 Recon (RSP10755)
  17. 0.287 Cherry (RSP11143)
  18. 0.288 CST (RSP11002)
  19. 0.290 RKM-2018-028 (RSP11120)
  20. 0.293 RKM-2018-006 (RSP11097)

Most genetically distant strains (All Samples)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.440 GMO x Garlic Breath (RSP12507)
  2. 0.438 80E (RSP11213)
  3. 0.428 80E (RSP11211)
  4. 0.426 Red Eye OG (RSP11190)
  5. 0.418 RKM-2018-012 (RSP11103)
  6. 0.416 CS Indica (RSP11658)
  7. 0.415 80E (RSP11212)
  8. 0.414 Feral (RSP11205)
  9. 0.414 Kush Hemp E1 (RSP11128)
  10. 0.411 CHEM4 (RSP12090)
  11. 0.411 RKM-2018-026 (RSP11118)
  12. 0.411 Cherry Blossom (RSP11317)
  13. 0.410 R3in134 (SRR14708220)
  14. 0.409 Peanut Butter Breath (RSP11640)
  15. 0.408 Skywalker OG (RSP10837)
  16. 0.408 GMO x Zkittlez #43 (RSP11976)
  17. 0.408 Fatso (RSP11741)
  18. 0.406 XBL1 (SRR14708207)
  19. 0.406 Cherry Blossom (RSP11324)
  20. 0.405 Cherry Blossom (RSP11311)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.441 Kush Hemp E1 (RSP11128)
  2. 0.432 RKM-2018-026 (RSP11118)
  3. 0.422 Skywalker OG (RSP10837)
  4. 0.394 RKM-2018-002 (RSP11093)
  5. 0.389 RKM-2018-034 (RSP11126)
  6. 0.389 Cherry (RSP11142)
  7. 0.387 Kyrgyz Gold (RSP11054)
  8. 0.386 USO 31 (RSP10981)
  9. 0.386 Ivory (RSP10668)
  10. 0.383 Santhica27 (RSP11047)
  11. 0.381 Carmagnola (RSP11037)
  12. 0.379 Feral (RSP10890)
  13. 0.379 Monoica (RSP10241)
  14. 0.374 Fedora 17 (RSP10661)
  15. 0.374 Lovrin (RSP10658)
  16. 0.372 Carmagnola (RSP10979)
  17. 0.371 The Gift (RSP10988)
  18. 0.370 Jiangji (RSP10653)
  19. 0.366 RKM-2018-022 (RSP11114)
  20. 0.363 Cbot-2019-005 (RSP11133)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4448375
Overlapping SNPs:
97
Concordance:
71

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495201
Overlapping SNPs:
9
Concordance:
8

Blockchain Registration Information

Transaction ID
2b68baaf2c79df92cacb0864e3d9a1cbef29e6473d720c4e1411e81a3f40ee0f
Stamping Certificate
Download PDF (849.7 KB)
SHASUM Hash
0ed1b6042017879d2814cfc3eb44c65f0410239386aaab61a992f6f30fbab9a8
QR code for RSP11170

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