JL 3rd Gen Mother
RSP 11197
Grower: Medicinal Genomics
General Information
- Accession Date
- June 26, 2019
- Reported Plant Sex
- not reported
- Report Type
- StrainSEEK v2 3.2Mb
- Child1
- RSP11193
- Child2
- RSP11194
- Child3
- RSP11195
- Child4
- RSP11198
- Child5
- RSP11199
- Child6
- RSP11200
The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.
Chemical Information
Cannabinoid and terpenoid information provided by the grower.
Cannabinoids
No information provided.
Terpenoids
No information provided.
Genetic Information
- Plant Type
- Type II
File Downloads
The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.
This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).



This chart represents the Illumina sequence coverage over the CBCA synthase gene.

Variants (THCAS, CBDAS, and CBCAS)
No variants to report
Variants (Select Genes of Interest)
PKSG-2a | c.774G>A | p.Met258Ile | missense variant | moderate | contig700 | 1944616 | C/T |
|
PKSG-2b | c.1152T>A | p.Asn384Lys | missense variant | moderate | contig700 | 1950486 | A/T | |
PKSG-2b | c.1132C>G | p.Leu378Val | missense variant | moderate | contig700 | 1950506 | G/C |
|
PKSG-2b | c.1117A>G | p.Ile373Val | missense variant | moderate | contig700 | 1950521 | T/C | |
PKSG-2b | c.31A>T | p.Thr11Ser | missense variant | moderate | contig700 | 1951851 | T/A | |
PKSG-4b | c.496A>G | p.Lys166Glu | missense variant | moderate | contig700 | 2721177 | T/C | |
PKSG-4b | c.489delT | p.Phe163fs | frameshift variant | high | contig700 | 2721183 | CA/C | |
PKSG-4b | c.485A>G | p.Lys162Arg | missense variant | moderate | contig700 | 2721188 | T/C | |
PKSG-4b | c.431T>G | p.Val144Gly | missense variant | moderate | contig700 | 2721242 | A/C | |
PKSG-4b |
c.352_355del |
p.Thr118fs | frameshift variant | high | contig700 | 2721317 | CCTGT/C |
|
PKSG-4b | c.323A>G | p.Glu108Gly | missense variant | moderate | contig700 | 2721350 | T/C |
|
PKSG-4b | c.316+2T>A | splice donor variant & intron variant | high | contig700 | 2723818 | A/T | ||
PKSG-4b | c.229G>A | p.Gly77Ser | missense variant | moderate | contig700 | 2724206 | C/T |
|
PKSG-4b | c.216G>C | p.Leu72Phe | missense variant | moderate | contig700 | 2724219 | C/G |
|
PKSG-4b | c.206T>C | p.Leu69Ser | missense variant | moderate | contig700 | 2724229 | A/G |
|
FAD2-2 | c.190C>T | p.His64Tyr | missense variant | moderate | contig83 | 1803179 | G/A |
|
FAD2-2 | c.161T>A | p.Leu54His | missense variant | moderate | contig83 | 1803208 | A/T |
|
FAD2-2 | c.154G>A | p.Val52Ile | missense variant | moderate | contig83 | 1803215 | C/T |
|
AAE1-2 | c.331A>G | p.Asn111Asp | missense variant | moderate | contig81 | 209293 | A/G |
|
AAE1-2 |
c.948_949ins |
p.Asp317fs | frameshift variant | high | contig81 | 209910 | C/CA |
|
AAE1-2 | c.952delC | p.Gln318fs | frameshift variant | high | contig81 | 209912 | AC/A |
|
AAE1-2 | c.953A>G | p.Gln318Arg | missense variant | moderate | contig81 | 209915 | A/G |
|
AAE1-2 | c.955C>T | p.Arg319Cys | missense variant | moderate | contig81 | 209917 | C/T |
|
AAE1-2 | c.1006A>G | p.Lys336Glu | missense variant | moderate | contig81 | 209968 | A/G |
|
PHL-1 | c.2651C>T | p.Ala884Val | missense variant | moderate | contig1439 | 1487146 | G/A | |
PHL-1 | c.2623A>G | p.Thr875Ala | missense variant | moderate | contig1439 | 1487174 | T/C |
|
PHL-1 | c.2561A>T | p.Asn854Ile | missense variant | moderate | contig1439 | 1487236 | T/A | |
PHL-1 | c.2551A>G | p.Thr851Ala | missense variant | moderate | contig1439 | 1487246 | T/C | |
PHL-1 | c.1387A>G | p.Thr463Ala | missense variant | moderate | contig1439 | 1489811 | T/C | |
TFL1 | c.302-1G>A | splice acceptor variant & intron variant | high | contig1636 | 520616 | C/T | ||
TFL1 | c.47_48dupAT | p.Val17fs | frameshift variant | high | contig1636 | 521258 | C/CAT | |
HDS-1 | c.1378G>A | p.Val460Ile | missense variant | moderate | contig1891 | 886370 | C/T |
|
HDS-1 | c.136G>A | p.Val46Ile | missense variant | moderate | contig1891 | 889256 | C/T | |
HDS-1 | c.56C>G | p.Ala19Gly | missense variant | moderate | contig1891 | 889336 | G/C | |
HDS-1 | c.35G>A | p.Cys12Tyr | missense variant | moderate | contig1891 | 889357 | C/T | |
HDS-1 |
c.-108+1_-10 |
splice donor variant & intron variant | high | contig1891 | 889975 | A/AC |
|
|
FT |
c.32_43dupAT |
p.Asn11_Asn1 |
disruptive inframe insertion | moderate | contig1561 | 3124441 |
T/TTAATAATAA |
|
AAE1-3 | c.667G>A | p.Val223Ile | missense variant | moderate | contig976 | 1083187 | C/T |
|
AAE1-3 | c.634G>C | p.Gly212Arg | missense variant | moderate | contig976 | 1083220 | C/G |
|
AAE1-3 | c.475G>A | p.Gly159Arg | missense variant | moderate | contig976 | 1083550 | C/T |
|
AAE1-3 | c.416T>C | p.Leu139Pro | missense variant | moderate | contig976 | 1083609 | A/G |
|
AAE1-3 | c.382T>C | p.Tyr128His | missense variant | moderate | contig976 | 1083643 | A/G |
|
AAE1-3 | c.296C>T | p.Pro99Leu | missense variant | moderate | contig976 | 1083729 | G/A |
|
AAE1-3 | c.293A>G | p.Asp98Gly | missense variant | moderate | contig976 | 1083732 | T/C |
|
AAE1-3 | c.284A>T | p.Glu95Val | missense variant | moderate | contig976 | 1083741 | T/A |
|
AAE1-3 | c.181G>A | p.Val61Ile | missense variant | moderate | contig976 | 1083894 | C/T |
|
AAE1-3 | c.167A>G | p.Glu56Gly | missense variant | moderate | contig976 | 1083908 | T/C |
|
AAE1-3 | c.125A>G | p.Glu42Gly | missense variant | moderate | contig976 | 1083950 | T/C |
|
AAE1-3 | c.79A>G | p.Thr27Ala | missense variant | moderate | contig976 | 1083996 | T/C |
|
AAE1-3 | c.52G>A | p.Gly18Ser | missense variant | moderate | contig976 | 1084023 | C/T |
|
AAE1-3 | c.3G>A | p.Met1? | start lost | high | contig976 | 1084072 | C/T | |
GGR | c.317C>T | p.Pro106Leu | missense variant | moderate | contig2282 | 549309 | C/T | |
GGR | c.456T>A | p.His152Gln | missense variant | moderate | contig2282 | 549448 | T/A |
|
GGR | c.460G>A | p.Asp154Asn | missense variant | moderate | contig2282 | 549452 | G/A |
|
GGR | c.704A>T | p.His235Leu | missense variant | moderate | contig2282 | 549696 | A/T |
|
GGR | c.810A>T | p.Glu270Asp | missense variant | moderate | contig2282 | 549802 | A/T |
|
Nearest genetic relatives (All Samples)
- 0.001 JL yellow (RSP11075)
- 0.002 JL 3rd Gen Mother (RSP11214)
- 0.137 JL 4th Gen 1 (RSP11193)
- 0.158 JL 4th Gen 3 (RSP11195)
- 0.165 JL 4th Gen 6 (RSP11200)
- 0.176 JL 4th Gen 4 (RSP11198)
- 0.179 JL 4th Gen 5 (RSP11199)
- 0.181 JL 4th Gen 2 (RSP11194)
- 0.194 Original Jamaican Lions (RSP11127)
- 0.200 JL 4th Gen 7 (RSP11153)
- 0.216 JL x NSPM1 4 (RSP11482)
- 0.216 JL X NSPM1 12 (RSP11472)
- 0.251 JL Tent 2 (RSP11489)
- 0.254 JL Tent 4 (RSP11491)
- 0.258 JL Tent 1 yellow stake (RSP11488)
- 0.264 JL X NSPM1 8 (RSP11470)
- 0.265 Super Blue Dream (RSP11011)
- 0.267 JL Tent 3 (RSP11490)
- 0.271 Blue Dream (RSP11342)
- 0.272 Blue Dream (RSP11008)
Nearest genetic relatives (Base Tree)
- 0.001 JL yellow (RSP11075)
- 0.292 Blue Dream (RSP11033)
- 0.296 CST (RSP11002)
- 0.297 RKM-2018-023 (RSP11115)
- 0.300 Skunk#18 (RSP11038)
- 0.302 RKM-2018-006 (RSP11097)
- 0.304 Kimbo Slice (RSP10997)
- 0.306 Italian Kiss (RSP11034)
- 0.306 Sour Raspberry (RSP10551)
- 0.321 Durban Poison (RSP11014)
- 0.321 Liberty Haze (RSP11000)
- 0.321 RKM-2018-027 (RSP11119)
- 0.321 UP Sunrise (RSP10989)
- 0.329 Blueberry Cheesecake (RSP10680)
- 0.329 Gold Cracker (RSP11048)
- 0.330 Blueberry Cheesecake (RSP10684)
- 0.331 Queen Jesus (RSP10105)
- 0.333 Tygra (RSP10667)
- 0.336 RKM-2018-009 (RSP11100)
- 0.338 Golden Goat 2 (RSP10991)
Most genetically distant strains (All Samples)
- 0.487 GMO x Poison Momosa (RSP12626)
- 0.479 80E (RSP11213)
- 0.479 JL Cross 6 (RSP11507)
- 0.479 JL Cross 14 (RSP11515)
- 0.478 Red Eye OG (RSP11190)
- 0.477 CS (RSP11208)
- 0.473 80E (RSP11211)
- 0.472 Cherry Blossom (RSP11333)
- 0.472 BagSeed (RSP12627)
- 0.471 Feral (RSP11206)
- 0.466 Feral (RSP11205)
- 0.465 Fatso (RSP11741)
- 0.465 Tiborszallasie (RSP11210)
- 0.463 80E (RSP11212)
- 0.461 Cbot-2019-005 (RSP11133)
- 0.459 Cherry Blossom (RSP11308)
- 0.459 Cherry Blossom (RSP11335)
- 0.459 CHEM4 (RSP12090)
- 0.458 CS Indica (RSP11658)
- 0.457 Wedding Cake x MAC (RSP11464)
Most genetically distant strains (Base Tree)
- 0.458 Cbot-2019-005 (RSP11133)
- 0.432 Cherry (RSP11142)
- 0.427 RKM-2018-002 (RSP11093)
- 0.423 Skywalker OG (RSP10837)
- 0.418 Kush Hemp E1 (RSP11128)
- 0.403 Cherry (RSP11143)
- 0.400 RKM-2018-026 (RSP11118)
- 0.388 Santhica27 (RSP11047)
- 0.387 Futura 75 (RSP10664)
- 0.385 RKM-2018-019 (RSP11111)
- 0.384 RKM-2018-034 (RSP11126)
- 0.384 RKM-2018-022 (RSP11114)
- 0.382 USO 31 (RSP10981)
- 0.379 Feral (RSP10890)
- 0.379 Tisza (RSP10659)
- 0.378 Monoica (RSP10241)
- 0.376 Fedora 17 (RSP10661)
- 0.376 RKM-2018-028 (RSP11120)
- 0.376 Cbot-2019-004 (RSP11132)
- 0.372 RKM-2018-032 (RSP11124)
Nearest genetic relative in Phylos dataset
- Overlapping SNPs:
- 76
- Concordance:
- 49
Nearest genetic relative in Lynch dataset
- Overlapping SNPs:
- 9
- Concordance:
- 7
Blockchain Registration Information
- Transaction ID
-
1f200418be06a31c
03079261e50d332f 7fa9e2860d7a034a 6ed7df73cf83c828 - Stamping Certificate
- Download PDF (854.9 KB)
- SHASUM Hash
-
43e00497c9035c51
c185a63bd06df2d3 beef0f37495dc3b2 fb04e31869c41ed8