JL 3rd Gen Mother

RSP 11214

Grower: Medicinal Genomics

General Information

Accession Date
June 26, 2019
Reported Plant Sex
not reported

The strain rarity visualization shows how distant the strain is from the other cultivars in the Kannapedia database. The y-axis represents genetic distance, getting farther as you go up. The width of the visualization at any position along the y-axis shows how many strains there are in the database at that genetic distance. So, a common strain will have a more bottom-heavy shape, while uncommon and rare cultivars will have a visualization that is generally shifted towards the top.

Rarity: Rare
Most Distant Most Similar

Chemical Information

Cannabinoid and terpenoid information provided by the grower.

Cannabinoids

No information provided.

Terpenoids

No information provided.

Genetic Information

Plant Type
Type II

The bell curve in the heterozygosity visualization shows the distribution of heterozygosity levels for cannabis cultivars in the Kannapedia database. The green line shows where this particular strain fits within the distribution. Heterozygosity is associated with heterosis (aka hybrid vigor) but also leads to the production of more variable offspring. When plants have two genetically different parents, heterozygosity levels will be higher than if it has been inbred or backcrossed repeatedly.

Heterozygosity: 0.4%
Least Heterozygous Most Heterozygous

This chart represents the Illumina sequence coverage over the Bt/Bd allele. These are the three regions in the cannabis genome that impact THCA, CBDA, CBGA production. Coverage over the Active CBDAS gene is highly correlated with Type II and Type III plants as described by Etienne de Meijer. Coverage over the THCA gene is highly correlated with Type I and Type II plants but is anti-correlated with Type III plants. Type I plants require coverage over the inactive CBDA loci and no coverage over the Active CBDA gene. Lack of coverage over the Active CBDA and Active THCA allele are presumed to be Type IV plants (CBGA dominant). While deletions of entire THCAS and CBDAS genes are the most common Bt:Bd alleles observed, it is possible to have plants with these genes where functional expression of the enzyme is disrupted by deactivating point mutations (Kojoma et al. 2006).

Bt/Bd Allele Coverage

This chart represents the Illumina sequence coverage over the CBCA synthase gene.

CBCAS Coverage

Variants (THCAS, CBDAS, and CBCAS)

No variants to report

Variants (Select Genes of Interest)

PKSG-2a

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1945149

IGV: Start, Jump

C/T
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1945150

IGV: Start, Jump

A/C
NGS:
0.136
C90:
0.000
PKSG-2a

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1945160

IGV: Start, Jump

A/G
NGS:
0.114
C90:
0.000
PKSG-2a

UniProt

c.67T>A p.Phe23Ile missense variant moderate contig700 1945567

IGV: Start, Jump

A/T
NGS:
0.825
C90:
0.904
PKSG-2a

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1945603

IGV: Start, Jump

T/A
NGS:
0.763
C90:
0.876
PKSG-2b

UniProt

c.1152T>A p.Asn384Lys missense variant moderate contig700 1950486

IGV: Start, Jump

A/T
NGS:
0.715
C90:
0.895
PKSG-2b

UniProt

c.1132C>G p.Leu378Val missense variant moderate contig700 1950506

IGV: Start, Jump

G/C
NGS:
0.717
C90:
0.000
PKSG-2b

UniProt

c.1117A>G p.Ile373Val missense variant moderate contig700 1950521

IGV: Start, Jump

T/C
NGS:
0.807
C90:
0.981
PKSG-2b

UniProt

c.241G>A p.Val81Met missense variant moderate contig700 1951397

IGV: Start, Jump

C/T
NGS:
0.154
C90:
0.000
PKSG-2b

UniProt

c.240T>G p.Asp80Glu missense variant moderate contig700 1951398

IGV: Start, Jump

A/C
NGS:
0.156
C90:
0.000
PKSG-2b

UniProt

c.230T>C p.Val77Ala missense variant moderate contig700 1951408

IGV: Start, Jump

A/G
NGS:
0.134
C90:
0.646
PKSG-2b

UniProt

c.224A>G p.Lys75Arg missense variant moderate contig700 1951414

IGV: Start, Jump

T/C
NGS:
0.151
C90:
0.957
PKSG-2b

UniProt

c.167C>G p.Thr56Ser missense variant moderate contig700 1951471

IGV: Start, Jump

G/C
NGS:
0.103
C90:
0.947
PKSG-2b

UniProt

c.31A>T p.Thr11Ser missense variant moderate contig700 1951851

IGV: Start, Jump

T/A
NGS:
0.844
C90:
0.880
PKSG-4b

UniProt

c.496A>G p.Lys166Glu missense variant moderate contig700 2721177

IGV: Start, Jump

T/C
NGS:
0.651
C90:
0.684
PKSG-4b

UniProt

c.489delT p.Phe163fs frameshift variant high contig700 2721183

IGV: Start, Jump

CA/C
NGS:
0.792
C90:
0.761
PKSG-4b

UniProt

c.485A>G p.Lys162Arg missense variant moderate contig700 2721188

IGV: Start, Jump

T/C
NGS:
0.643
C90:
0.301
PKSG-4b

UniProt

c.431T>G p.Val144Gly missense variant moderate contig700 2721242

IGV: Start, Jump

A/C
NGS:
0.575
C90:
0.679
PKSG-4b

UniProt

c.352_355delACAG p.Thr118fs frameshift variant high contig700 2721317

IGV: Start, Jump

CCTGT/C
NGS:
0.529
C90:
0.000
PKSG-4b

UniProt

c.323A>G p.Glu108Gly missense variant moderate contig700 2721350

IGV: Start, Jump

T/C
NGS:
0.469
C90:
0.000
PKSG-4b

UniProt

c.316+2T>A splice donor variant & intron variant high contig700 2723818

IGV: Start, Jump

A/T
NGS:
0.070
C90:
0.689
PKSG-4b

UniProt

c.229G>A p.Gly77Ser missense variant moderate contig700 2724206

IGV: Start, Jump

C/T
NGS:
0.042
C90:
0.000
PKSG-4b

UniProt

c.216G>C p.Leu72Phe missense variant moderate contig700 2724219

IGV: Start, Jump

C/G
NGS:
0.044
C90:
0.000
PKSG-4b

UniProt

c.206T>C p.Leu69Ser missense variant moderate contig700 2724229

IGV: Start, Jump

A/G
NGS:
0.044
C90:
0.000
OAC-2

UniProt

c.22G>A p.Val8Ile missense variant moderate contig931 110317

IGV: Start, Jump

C/T
NGS:
0.018
C90:
0.000
OAC-1

UniProt

c.185C>T p.Thr62Ile missense variant moderate contig931 118179

IGV: Start, Jump

G/A
NGS:
0.039
C90:
0.000
OAC-1

UniProt

c.175G>A p.Val59Ile missense variant moderate contig931 118189

IGV: Start, Jump

C/T
NGS:
0.026
C90:
0.000
OAC-1

UniProt

c.22G>A p.Val8Ile missense variant moderate contig931 118442

IGV: Start, Jump

C/T
NGS:
0.004
C90:
0.000
AAE1-2

UniProt

c.331A>G p.Asn111Asp missense variant moderate contig81 209293

IGV: Start, Jump

A/G
NGS:
0.123
C90:
0.000
AAE1-2

UniProt

c.948_949insA p.Asp317fs frameshift variant high contig81 209910

IGV: Start, Jump

C/CA
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.952delC p.Gln318fs frameshift variant high contig81 209912

IGV: Start, Jump

AC/A
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.953A>G p.Gln318Arg missense variant moderate contig81 209915

IGV: Start, Jump

A/G
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.955C>T p.Arg319Cys missense variant moderate contig81 209917

IGV: Start, Jump

C/T
NGS:
0.050
C90:
0.000
AAE1-2

UniProt

c.1006A>G p.Lys336Glu missense variant moderate contig81 209968

IGV: Start, Jump

A/G
NGS:
0.116
C90:
0.000
PHL-1

UniProt

c.2651C>T p.Ala884Val missense variant moderate contig1439 1487146

IGV: Start, Jump

G/A
NGS:
0.044
C90:
0.622
PHL-1

UniProt

c.2623A>G p.Thr875Ala missense variant moderate contig1439 1487174

IGV: Start, Jump

T/C
NGS:
0.123
C90:
0.000
PHL-1

UniProt

c.2561A>T p.Asn854Ile missense variant moderate contig1439 1487236

IGV: Start, Jump

T/A
NGS:
0.046
C90:
0.612
PHL-1

UniProt

c.2551A>G p.Thr851Ala missense variant moderate contig1439 1487246

IGV: Start, Jump

T/C
NGS:
0.116
C90:
0.890
PHL-1

UniProt

c.1387A>G p.Thr463Ala missense variant moderate contig1439 1489811

IGV: Start, Jump

T/C
NGS:
0.107
C90:
0.904
TFL1

UniProt

c.302-1G>A splice acceptor variant & intron variant high contig1636 520616

IGV: Start, Jump

C/T
NGS:
0.103
C90:
0.794
TFL1

UniProt

c.47_48dupAT p.Val17fs frameshift variant high contig1636 521258

IGV: Start, Jump

C/CAT
NGS:
0.026
C90:
0.211
HDS-1

UniProt

c.1378G>A p.Val460Ile missense variant moderate contig1891 886370

IGV: Start, Jump

C/T
NGS:
0.167
C90:
0.000
HDS-1

UniProt

c.136G>A p.Val46Ile missense variant moderate contig1891 889256

IGV: Start, Jump

C/T
NGS:
0.088
C90:
0.593
HDS-1

UniProt

c.56C>G p.Ala19Gly missense variant moderate contig1891 889336

IGV: Start, Jump

G/C
NGS:
0.125
C90:
0.943
HDS-1

UniProt

c.35G>A p.Cys12Tyr missense variant moderate contig1891 889357

IGV: Start, Jump

C/T
NGS:
0.094
C90:
0.646
HDS-1

UniProt

c.-108+1_-108+2insG splice donor variant & intron variant high contig1891 889975

IGV: Start, Jump

A/AC
NGS:
0.217
C90:
0.000
FT

UniProt

c.32_43dupATAATAATAATA p.Asn11_Asn14dup disruptive inframe insertion moderate contig1561 3124441

IGV: Start, Jump

T/TTAATAATAATAA
NGS:
0.066
C90:
0.000
AAE1-3

UniProt

c.667G>A p.Val223Ile missense variant moderate contig976 1083187

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.634G>C p.Gly212Arg missense variant moderate contig976 1083220

IGV: Start, Jump

C/G
NGS:
0.116
C90:
0.000
AAE1-3

UniProt

c.475G>A p.Gly159Arg missense variant moderate contig976 1083550

IGV: Start, Jump

C/T
NGS:
0.048
C90:
0.000
AAE1-3

UniProt

c.416T>C p.Leu139Pro missense variant moderate contig976 1083609

IGV: Start, Jump

A/G
NGS:
0.061
C90:
0.000
AAE1-3

UniProt

c.382T>C p.Tyr128His missense variant moderate contig976 1083643

IGV: Start, Jump

A/G
NGS:
0.072
C90:
0.000
AAE1-3

UniProt

c.296C>T p.Pro99Leu missense variant moderate contig976 1083729

IGV: Start, Jump

G/A
NGS:
0.046
C90:
0.000
AAE1-3

UniProt

c.293A>G p.Asp98Gly missense variant moderate contig976 1083732

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.284A>T p.Glu95Val missense variant moderate contig976 1083741

IGV: Start, Jump

T/A
NGS:
0.053
C90:
0.000
AAE1-3

UniProt

c.181G>A p.Val61Ile missense variant moderate contig976 1083894

IGV: Start, Jump

C/T
NGS:
0.055
C90:
0.000
AAE1-3

UniProt

c.167A>G p.Glu56Gly missense variant moderate contig976 1083908

IGV: Start, Jump

T/C
NGS:
0.070
C90:
0.000
AAE1-3

UniProt

c.125A>G p.Glu42Gly missense variant moderate contig976 1083950

IGV: Start, Jump

T/C
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.79A>G p.Thr27Ala missense variant moderate contig976 1083996

IGV: Start, Jump

T/C
NGS:
0.068
C90:
0.000
AAE1-3

UniProt

c.52G>A p.Gly18Ser missense variant moderate contig976 1084023

IGV: Start, Jump

C/T
NGS:
0.064
C90:
0.000
AAE1-3

UniProt

c.3G>A p.Met1? start lost high contig976 1084072

IGV: Start, Jump

C/T
NGS:
0.046
C90:
0.416
GGR

UniProt

c.317C>T p.Pro106Leu missense variant moderate contig2282 549309

IGV: Start, Jump

C/T
NGS:
0.035
C90:
0.220
GGR

UniProt

c.456T>A p.His152Gln missense variant moderate contig2282 549448

IGV: Start, Jump

T/A
NGS:
0.068
C90:
0.000
GGR

UniProt

c.460G>A p.Asp154Asn missense variant moderate contig2282 549452

IGV: Start, Jump

G/A
NGS:
0.070
C90:
0.000
GGR

UniProt

c.704A>T p.His235Leu missense variant moderate contig2282 549696

IGV: Start, Jump

A/T
NGS:
0.121
C90:
0.000
GGR

UniProt

c.810A>T p.Glu270Asp missense variant moderate contig2282 549802

IGV: Start, Jump

A/T
NGS:
0.024
C90:
0.000

Nearest genetic relatives (All Samples)

0 0.075 0.150 0.225 0.300
clone distance sibling distance more distant
  1. 0.001 JL yellow (RSP11075)
  2. 0.001 JL 3rd Gen Mother (RSP11197)
  3. 0.131 JL 4th Gen 1 (RSP11193)
  4. 0.149 JL 4th Gen 3 (RSP11195)
  5. 0.154 JL 4th Gen 5 (RSP11199)
  6. 0.154 JL 4th Gen 2 (RSP11194)
  7. 0.159 JL 4th Gen 6 (RSP11200)
  8. 0.164 JL 4th Gen 4 (RSP11198)
  9. 0.183 Jamaican Lions Ancestor (RSP11127)
  10. 0.195 JL 4th Gen 7 (RSP11153)
  11. 0.266 Italian Kiss (RSP10990)
  12. 0.267 Blue Dream (RSP11342)
  13. 0.273 RKM-2018-006 (RSP11097)
  14. 0.275 Italian Kiss (RSP11034)
  15. 0.278 JL 3rd Gen Father (RSP11196)
  16. 0.280 CST (RSP11002)
  17. 0.281 RKM-2018-010 (RSP11101)
  18. 0.282 Blue Dream (RSP11005)
  19. 0.282 Blue Dream (RSP11008)
  20. 0.283 Snoops Dream (RSP11031)

Nearest genetic relatives (Base Tree)

0 0.083 0.167 0.250 0.333
clone distance sibling distance more distant
  1. 0.001 JL yellow (RSP11075)
  2. 0.272 CST (RSP11002)
  3. 0.272 Italian Kiss (RSP11034)
  4. 0.277 Blue Dream (RSP11033)
  5. 0.278 Sour Raspberry (RSP10551)
  6. 0.280 RKM-2018-006 (RSP11097)
  7. 0.282 RKM-2018-023 (RSP11115)
  8. 0.294 RKM-2018-009 (RSP11100)
  9. 0.296 Hermaphrodite ResearchSample2 (RSP11050)
  10. 0.297 RKM-2018-027 (RSP11119)
  11. 0.299 Skunk 18 (RSP11038)
  12. 0.305 UP Sunrise (RSP10989)
  13. 0.306 Gold Cracker (RSP11048)
  14. 0.308 Kimbo Slice (RSP10997)
  15. 0.315 QUEEN JESUS (RSP10105)
  16. 0.316 Hermaphrodite Research Sample1 (RSP11049)
  17. 0.319 RKM-2018-031 (RSP11123)
  18. 0.321 Blueberry Cheesecake (RSP10680)
  19. 0.325 Black Beauty (RSP11035)
  20. 0.328 RKM-2018-029 (RSP11121)

Most genetically distant strains (All Samples)

0 0.133 0.267 0.400 0.533
clone distance sibling distance more distant
  1. 0.501 Cherry Blossom (RSP11333)
  2. 0.497 Cherry Blossom (RSP11308)
  3. 0.496 Cherry Blossom (RSP11335)
  4. 0.492 Cherry Blossom (RSP11311)
  5. 0.480 Cherry Blossom (RSP11328)
  6. 0.480 Cherry Blossom (RSP11334)
  7. 0.478 Cherry Blossom (RSP11302)
  8. 0.478 Cherry Blossom (RSP11317)
  9. 0.477 Cherry Blossom (RSP11324)
  10. 0.469 Cherry Blossom (RSP11318)
  11. 0.466 Cherry Blossom (RSP11314)
  12. 0.462 Cherry Blossom (RSP11331)
  13. 0.458 Cherry Blossom (RSP11323)
  14. 0.456 Avidekel (RSP10938)
  15. 0.455 Cherry Blossom (RSP11300)
  16. 0.453 Cherry Blossom (RSP11310)
  17. 0.453 Cbot-2019-005 (RSP11133)
  18. 0.452 Cherry Blossom (RSP11326)
  19. 0.450 Unknown- Cherry Wine - 002 (RSP11269)
  20. 0.450 Unknown- Cherry Wine - 001 (RSP11268)

Most genetically distant strains (Base Tree)

0 0.117 0.233 0.350 0.467
clone distance sibling distance more distant
  1. 0.454 Cbot-2019-005 (RSP11133)
  2. 0.406 Cherry (RSP11142)
  3. 0.401 Cherry (RSP11143)
  4. 0.391 Santhica27 (RSP11047)
  5. 0.391 Kush Hemp E1 (RSP11128)
  6. 0.387 Skywalker OG (RSP10837)
  7. 0.384 RKM-2018-002 (RSP11093)
  8. 0.376 RKM-2018-019 (RSP11111)
  9. 0.366 USO 31 (RSP10981)
  10. 0.364 Monoica (RSP10241)
  11. 0.362 Cbot-2019-004 (RSP11132)
  12. 0.362 Lovrin (RSP10658)
  13. 0.361 RKM-2018-026 (RSP11118)
  14. 0.361 Carmagnola (RSP11037)
  15. 0.360 Ivory (RSP10668)
  16. 0.358 Tisza (RSP10659)
  17. 0.358 RKM-2018-034 (RSP11126)
  18. 0.358 Fedora 17 (RSP10661)
  19. 0.356 Kyrgyz Gold (RSP11054)
  20. 0.355 RKM-2018-032 (RSP11124)

Nearest genetic relative in Phylos dataset

Phylos Strain SRR4451125
Overlapping SNPs:
84
Concordance:
51

Nearest genetic relative in Lynch dataset

Lynch Strain SRR3495238
Overlapping SNPs:
9
Concordance:
7

Blockchain Registration Information

Transaction ID
968b159ec5a34f1e60fe026b764f1aee6dd2bfc1cee998c75eda8b0c5e62f01a
Stamping Certificate
Download PDF (856.0 KB)
SHASUM Hash
2c623a04e7968555d6432c3806b5bddf7774ef88e5cb15ce854974f056f2e12d
QR code for RSP11214

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